Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1122 ATGATTTCCATTGCCCCACCGTGCGACGGCCAACAGCCCATAATCTCCTCCAAATTCTCATCCTCTCTGCCGCCCACGACGGCGCCGACCCATATTTTCCGATCGAAATTACCGGACATTATAATCCCCGACCATCTCCCTCTTCACAGTTACTGCTTTGAGAAACTCTCTGAATTTTCCGACCGCCCCTGTTTGATCGTCGGCTCCACCGGAAAATCCTATTCCTACTCCGAAACCCATCTATTCTCGCGGAAGGCCGCCGCGACTTTCTCTAAACTCGGAATTAAGAAAGGCGATGTCATTATGATTCTCCTCCAGAACTCTGCGGAATTTGTTTTCTCCTTTATGGGTTCCTCGATGATCGGCGCCGTCGCCACCACCGCCAATCCTTACTACACGGCGGCGGAGATTTCCAAGCAGTTGAAGGTCTCGGGTGCCAAATTGGTGGTTACTTACTCGCAATGCGTCCACAAGCTCCGAGAATCCGGCGAGGATCTCACCATTCTCACCGTCGATGACCCGCCCGAGAATTGTCTGAGCTTCTCGATGGTTTACGATGCGGATGAGAACGACGTCCCCGCCGTGGAGATTAACTCGAACGACGCCGTTTCGCTGCCGTTCTCCTCCGGCACGACGGGGCTTCCGAAGGGGGTGATTTTGACACATAAGAGCATGGTGTCGAGTGTGGCTCAACAGGTGGATGGGGAGAATCCGAACGTGTATTTGAGAACAAACGATGTAGTTTTATGCGTGCTTCCGATGTTCCACATATTCTCATTAAGTAGTGTAGTTTTGATTTCGATTAGGACAGGGGCAGCGCTATTGTTGATGGAGAAGTTTGAGATAGAGTCTTTGTTGCGGCTTATAGAGACGCATGGGGTGACGGTAGCTACGGTGGTGCCACCGTTGGTGGTGGCATTGGTTAAGACCCCAAAAGTGGCGGATTTTGACCTGAGCTCAATTAGAATGGTGCTTTCCGGGGCGGCGCCGCTGCGAAAGGAGCTCGAGGAGGCCCTCATGCATAGGATCCCACAAGCAATTTTTGGTCAGGGTTATGGGATGACGGAGGCGGGTCCAGTGCTGAGCATGTGCTCAGCTTTTGCAAAGGAGCCACCGATGCCAACAAAATCAGGGTCCTGCGGCAGAGTGGTGAGAAATTCAGAGCTCAAAGTCATTGACCCACAAACTGGCGCCTCTCTCACCTATAATCAACCTGGAGAGATTTGTGTTCGTGGTCCTCAAATTATGAAAGGATATTTGAACGACCCGGTTGCCACGTCATTGACTGTCGACGTGGAGGGTTGGCTTCATACGGGTGACATTGGTTACATTGACGATGAAGAAGAAATTTTTATTGTTGACAGAGTCAAAGAGATCATTAAATATAAAGGTTTCCAGGTGGCGCCAGCGGAGTTGGAGGCCCTTCTTGTGACCCATCCATTTATTGTGGATGCAGCTGTTGTCCCGCAAAATGATGATGATGCTGGTGAAGTTCCAGTGGCTTTCGTAGTTCGATCAACTAGTAATGAGCTTACGGAGGACACAGTAAAACAATTCATAGCAAAGCAGGTTGTGTTCTACAAGAGATTGCAGAAAGTTTACTTTGTGCAAGGAATTCCAAAATCGGCCTCTGGAAAGATCTTGAGAAAGGATCTGAAAGGCAAGCTCTCAGTCTCACCACCAGCCTCTTAA 1692 49.94 MISIAPPCDGQQPIISSKFSSSLPPTTAPTHIFRSKLPDIIIPDHLPLHSYCFEKLSEFSDRPCLIVGSTGKSYSYSETHLFSRKAAATFSKLGIKKGDVIMILLQNSAEFVFSFMGSSMIGAVATTANPYYTAAEISKQLKVSGAKLVVTYSQCVHKLRESGEDLTILTVDDPPENCLSFSMVYDADENDVPAVEINSNDAVSLPFSSGTTGLPKGVILTHKSMVSSVAQQVDGENPNVYLRTNDVVLCVLPMFHIFSLSSVVLISIRTGAALLLMEKFEIESLLRLIETHGVTVATVVPPLVVALVKTPKVADFDLSSIRMVLSGAAPLRKELEEALMHRIPQAIFGQGYGMTEAGPVLSMCSAFAKEPPMPTKSGSCGRVVRNSELKVIDPQTGASLTYNQPGEICVRGPQIMKGYLNDPVATSLTVDVEGWLHTGDIGYIDDEEEIFIVDRVKEIIKYKGFQVAPAELEALLVTHPFIVDAAVVPQNDDDAGEVPVAFVVRSTSNELTEDTVKQFIAKQVVFYKRLQKVYFVQGIPKSASGKILRKDLKGKLSVSPPAS 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11201392 11209560 + Hsped.08g11220.1 Hepe08g1122 577094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1122 563 CDD 4CL 42 552 - -
Hepe08g1122 563 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 29 553 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
Hepe08g1122 563 ProSitePatterns Putative AMP-binding domain signature. 205 216 IPR020845 -
Hepe08g1122 563 Gene3D - 26 456 IPR042099 -
Hepe08g1122 563 Gene3D - 457 557 IPR045851 -
Hepe08g1122 563 Pfam AMP-binding enzyme 55 420 IPR000873 -
Hepe08g1122 563 SUPERFAMILY Acetyl-CoA synthetase-like 29 554 - -
Hepe08g1122 563 FunFam Long-chain-fatty-acid--CoA ligase FadD 34 457 - -
Hepe08g1122 563 FunFam 4-coumarate--CoA ligase 2 458 558 - -
Hepe08g1122 563 Pfam AMP-binding enzyme C-terminal domain 471 546 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0809 Hepe-Chr7:9948457 Hepe08g1122 Hepe-Chr8:11201392 3.50e-24 dispersed
Hepe07g2136 Hepe-Chr7:65672121 Hepe08g1122 Hepe-Chr8:11201392 6.72e-97 dispersed
Hepe08g1122 Hepe-Chr8:11201392 Hepe08g2161 Hepe-Chr8:60864587 1.70e-229 dispersed
Hepe04g2052 Hepe-Chr4:75378941 Hepe08g1122 Hepe-Chr8:11201392 2.80e-30 transposed
Hepe05g0275 Hepe-Chr5:3364903 Hepe08g1122 Hepe-Chr8:11201392 3.29e-127 transposed
Hepe06g1557 Hepe-Chr6:66280576 Hepe08g1122 Hepe-Chr8:11201392 4.19e-47 transposed
Hepe02g1279 Hepe-Chr2:15978600 Hepe08g1122 Hepe-Chr8:11201392 2.09e-201 wgd
Hepe06g1813 Hepe-Chr6:69210885 Hepe08g1122 Hepe-Chr8:11201392 6.15e-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1122 K01904 - csv:101221344 917.916