Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1152 ATGAATGGCCCTTTAATTCTCATTTCTTCTCTTCCCCTTCCAACATCCATGGCGGTGGAGCTCCTCCCAGGCTTCCAACTCTCCGCCCCAATGGACCAAGACTCCGCCGTCCAAGCAGCCACCTCCTCCGGCCTCGACACCCTCAAAAAACTCATCTCATTGCTCTCTCACCCCCACTCTCCCTCCCCCCCTTCTAATCTCGATTCCGATTGCCAAGCCGTCGCCAACGCCGCCGTCTCCCACTTCAAAAAGGCCATTTCCCTCCTCGGCCGCTCCCCTCGAACCGGCCACGCCCGATTCCGCCGAGCCCCTTTGGATTCCTCTAAGATTTACAACGCCACCCCGATTCAGCAAATCCCTCCTCCTCCTCCTCCTCCACCCCTTGTTGAATCGGCCACCACCATCAATTTCTCTTACTCCTCCGCTCCTAGCGGCTCGTTCTTAACCTCGCTTGCTGCTGCCGACTCCGAAATTAACCTCCAACACCAACCCCCTTCGTCTTCTTTTCAGATTACTGATCTTTCCAGAGTTTCGTCTCACGTCTCTAAGCCTTCTTCTGCTCTCAAGAGGAAGTGCGATTCTGAGAATTTGGGCTCTGGGAAGTGCGGTGGATCCTCTGGTGGTCGTTGCCACTGCTCTAAGAAGAGAAAAATGAGGATGAAAAGGGTGGTGAGAGTTCCAGCCATAAGCTCAAAGAATGCTGATATTCCTCCTGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTACAAATGTAGCAGTTTAAGAGGATGTCCAGCTAGAAAACATGTTGAGAGAGCCTCAGATGATCCATCTATGTTAGTAGTGACTTATGAAGGCGACCATAATCATGCTCAATCAGTTGCAGAAGCCTCGAGTCTAATTCTTGAATCTTGGTGA 933 51.02 MNGPLILISSLPLPTSMAVELLPGFQLSAPMDQDSAVQAATSSGLDTLKKLISLLSHPHSPSPPSNLDSDCQAVANAAVSHFKKAISLLGRSPRTGHARFRRAPLDSSKIYNATPIQQIPPPPPPPPLVESATTINFSYSSAPSGSFLTSLAAADSEINLQHQPPSSSFQITDLSRVSSHVSKPSSALKRKCDSENLGSGKCGGSSGGRCHCSKKRKMRMKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLVVTYEGDHNHAQSVAEASSLILESW 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11676588 11678728 - Hsped.08g11520.1 Hepe08g1152 577124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1152 310 SUPERFAMILY WRKY DNA-binding domain 233 296 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe08g1152 310 Pfam Plant zinc cluster domain 189 235 IPR018872 -
Hepe08g1152 310 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 42 300 IPR044810 GO:0003700(InterPro)
Hepe08g1152 310 FunFam WRKY transcription factor 65 221 298 - -
Hepe08g1152 310 Gene3D WRKY domain 211 298 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe08g1152 310 Pfam WRKY DNA -binding domain 239 295 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe08g1152 310 ProSiteProfiles WRKY domain profile. 232 298 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe08g1152 310 SMART WRKY_cls 237 297 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1960 Hepe-Chr6:70850247 Hepe08g1152 Hepe-Chr8:11676588 1.48e-49 dispersed
Hepe07g1840 Hepe-Chr7:61214847 Hepe08g1152 Hepe-Chr8:11676588 1.84e-26 dispersed
Hepe08g1152 Hepe-Chr8:11676588 Hepe09g0437 Hepe-Chr9:3944685 8.21e-50 dispersed
Hepe01g1792 Hepe-Chr1:82975299 Hepe08g1152 Hepe-Chr8:11676588 2.76e-63 wgd
Hepe02g1294 Hepe-Chr2:16263377 Hepe08g1152 Hepe-Chr8:11676588 2.51e-17 wgd
Hepe04g1263 Hepe-Chr4:68169831 Hepe08g1152 Hepe-Chr8:11676588 2.49e-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56188 PF03106 WRKY 2.90E-26 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1152 - - - 0.0