Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1166 ATGCATCCCGATGAACGGCAGCAGCAGCCGTTGTTGGAGGAGGAAGAGGAAGAAACTGCTTACGACTTGACGGAGAAGGTTGTGGTAATTGGGATCGACGAAGCGGAGTCCGATTCGGGCTTGGGTTTGCCGCCGTTTTCATGGAGGAAGCTGTGGCTGTTCACAGGGCCTGGCTTTTTGATGAGCATAGCGTTTTTAGACCCTGGGAATTTGGAGTCCAATCTTCAGGCTGGTGCTATTGCTGGGTATTCTTTGTTGTGGCTTCTGTTTTGGGCTACGGCTATGGGGCTTTTGATCCAGTTGCTTTCTGCCAGGCTTGGAGTTGCCACTGGCAGGCACTTGGCCGAGCTTTGTAGAGAAGAGTACCCAACTTGGGCGAGAATTGTGCTGTGGGTTATGGCGGAATTGGCTCTCATTGGAGCTGATATACAGGAAGTTATTGGGAGTGCTATTGCTATCAAGATTCTCAGTAATGGGGCTTTGCCTCTTTGGGCTGGAGTTATCATCACTGCTTTAGATTGTTTTATCTTCCTGTTTCTTGAGAACTATGGTGTGAGGAAATTGGAGGCTGTTTTTGCTGTTCTCATTGCTACAATGGCACTCTCGTTTGCTTGGATGTTTGGTGAAACTAAGCCAAATGGGAAGGAGCTTCTATTGGGTCTTTTGATTCCGAAACTTAGCTCCAAGACAATTAAACAGGCTGTTGCTGTTGTGGGCTGTATCATTATGCCTCATAATGTGTTTCTGCACTCGGCTCTTGTGCAGTCGCGAGATGTCGATCCGAGCAAGAAAGGGCGGGTCCGAGAAGCTCTCAGATACTACTCCATTGAGTCCACTCTTGCCCTTTTTGTCTCCTTCATCATCAACTTGCTTGTTACAACTGTGTTTGCTAAAGCTTTCTATGGCACAGACATAGCGGGTAGCATCGGTCTTGTAAACGCAGGCGGATATCTTCAAGATAAGTATGGTAGAGGGCTTTTCCCCATTTTGTACATCTGGGCTATTGGTTTGTTAGCTGCTGGCCAAAGTAGCACCATTACAGGTACCTATGCAGGACAGTTTATCATGGGAGGCTTCCTTAATTTGAAGTTGAAAAAATGGCTAAGAGCTTTGATAACTCGAAGCTTTGCAATCGTGCCGACTATGATTGTCGCTCTACTGTTTGAAACTTCCGACGGGATGGTCGATGTTCTGAATGAATGGCTCAATGTCCTCCAGTCAATTCAGATCCCCTTTGCTCTGATTCCTCTTCTCTGTTTGGTTTCTAAGGAACATCTAATGGGCACTTTCAGAATCGGCCCTGTTTTAAAGACGTTCTCTTGGCTGGTGGCAGTCTTGGTGATGGCCATTAACGGGTATCTGTTGGTGAGCTTCTTCTCATCGGAAGTGAATGGACCGCTCCTTGCCATTTTTGTGCTCGTCTTCATCGCTGGATATCTTGCCTTTGTTGTTTACCTCGTCTATCGAAGCATTTCGTTTTCAAGTTGGAACAACTTCATAAGCAGGAAGTTCACAAACTCTGAAACCTGA 1530 46.6 MHPDERQQQPLLEEEEEETAYDLTEKVVVIGIDEAESDSGLGLPPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLFWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARIVLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPNGKELLLGLLIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVDPSKKGRVREALRYYSIESTLALFVSFIINLLVTTVFAKAFYGTDIAGSIGLVNAGGYLQDKYGRGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALLFETSDGMVDVLNEWLNVLQSIQIPFALIPLLCLVSKEHLMGTFRIGPVLKTFSWLVAVLVMAINGYLLVSFFSSEVNGPLLAIFVLVFIAGYLAFVVYLVYRSISFSSWNNFISRKFTNSET 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11915835 11919157 + Hsped.08g11660.1 Hepe08g1166 577138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1166 509 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 23 492 IPR001046 GO:0005384(PANTHER)|GO:0005774(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0042742(PANTHER)|GO:0046873(InterPro)|GO:0055072(PANTHER)|GO:2000379(PANTHER)
Hepe08g1166 509 Pfam Natural resistance-associated macrophage protein-like 72 433 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Hepe08g1166 509 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Hepe08g1166 509 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Hepe08g1166 509 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Hepe08g1166 509 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Hepe08g1166 509 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Hepe08g1166 509 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Hepe08g1166 509 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Hepe08g1166 509 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Hepe08g1166 509 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Hepe08g1166 509 NCBIfam Nramp family divalent metal transporter 56 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2229 Hepe-Chr2:63236468 Hepe08g1166 Hepe-Chr8:11915835 2.82e-102 dispersed
Hepe08g1165 Hepe-Chr8:11899683 Hepe08g1166 Hepe-Chr8:11915835 2.15e-09 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1166 K21398 - csv:101211711 894.419