Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g1171 | ATGGGGGTATCATTACTTAAAGTGCTTCTTAGACATATTTCATCATTTCTTCAACTTTCATCGTCTGACTACATAAATTTACAACCGACTCTGAAGTACTACCATAAAATAGAAGGGGTCTTGAAACTATTGAAGCCAATACTGGATGCAGTTGTTGATTCAGATATAGCTACCGATGAAGAGCTTACTAAGGCATTCGAAGAACTTGATCATTCAGTGGATGAACTAAGAGTGCTCTTTGAAAATTGGCAACCATTGTCAAGTAAAGTATACTTTGTACTGCAAAGTGAAGCATTAATATTAAAGATTGGGAAATCTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGCGTCCAAAAAATTAAGAATGTTGGAAAGGAAGAAATATCTTCTGTTATTAAAGATGCCATAAGGAACCAAGTAGAGGGTATTGCACCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTGAGCTTGAGATCAAATCAGGAAATCTTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAAAGTGCAGAACAAGCTGAAAATACTCGAGAAGCTGAGGACATTGATCAAATGGTTGCTCTTGTGACCCGTATGCATGAGCGACTTATTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGGGTTTTTATAAAAAATTGGATTGATCTGGGGCTCAATGTCTGCCCAAAGACTAGACAGACATTGGCTCACACGAATCTTATACCTAATTATACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTGAAATTGTCTGATCCCTCAAGGTCAGTGCACTTAAACGAGCTTTCGCCCCTTCTCGTTGGGAGCTTTGAGTCTGATACCCATCGAGAACCCCATTTTCCTCATTCCCCTGGCTACCAACCGATGTCCCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTTGCTCTCCCATTCTTTCTCTGAGGATTCCATGTCAAATGATGCTGGAGATGAAAGAGGGATTGATGTCAGTAGACTATTGCTTACAAGTTCGGAAGATCAAATGGCCAAATTGGAAGAAAATGGTTGCGATTTGGTTGCTAAACCATCTATGTCACCATCTAGAACCAATGTTCCAAATACCAATGAGGATGAACCGTCACATAGTCATAATAGAACTGCCTCCACCTCCAGTGCAGTTTCAAATGCTAATCTCTCTCGAGGAACATCAGGGGAAGCCAATGGAGCTTTACAGTTGTCAACGAACCAATCTGGGGAGGGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGAATACCAACCACAGAGAACCAGAGTTTCCACTCCGACTAGCTGACTCAAGATCTCGAGGTAGTACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCACTAGAATAACTACATCATCTGCTAATGAGACGAGGCCGGATCTTTCTGCGCTTGAAGCACAAGTTCAGAAGATTGTTGAGGAATTGAAGAGCAGTTCACTTGAAACTTTAAGAGATGCTACAGCTGAATTGCGGCTACTGGCCAAACATAATATGGACAACCGGATAGTGATTGCTCAATCTGGGGCCATTGCATATTTGGTTGAATTGCTTCTCTCTGCAGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAATGCTATTGCTCAGGCCAATGCAATTGAGCCTCTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCGAAGGAGAACTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTGTTGGGCAATGGAACTCCGAGGGGAAAGAAGGATGCAGCTACAGCTTTGTTTAATTTGTCAATATTCCATGAGAACAAGGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACAATTCCCGAGGGTAGGTCTGCAATTGGTCAGGAAGGTGGAATTCCCGTTCTGGTCGAGGTCGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTTTGCACAACAAGCAGTAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAAAAGGCCCAAGCACTTCTAAGCCATTTCAGAAGCCAGAGACATGGCAATTCAGGAAGAGGGTAA | 2490 | 43.69 | MGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGVLKLLKPILDAVVDSDIATDEELTKAFEELDHSVDELRVLFENWQPLSSKVYFVLQSEALILKIGKSSLDIFQLLQSSNENLPEELSSTSLEHCVQKIKNVGKEEISSVIKDAIRNQVEGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTREAEDIDQMVALVTRMHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGLNVCPKTRQTLAHTNLIPNYTVKALIANWCETNNVKLSDPSRSVHLNELSPLLVGSFESDTHREPHFPHSPGYQPMSPQSTRSAGSGKNLNSLGGTHRDGSSLLSHSFSEDSMSNDAGDERGIDVSRLLLTSSEDQMAKLEENGCDLVAKPSMSPSRTNVPNTNEDEPSHSHNRTASTSSAVSNANLSRGTSGEANGALQLSTNQSGEGKSEPLAAATSNTNHREPEFPLRLADSRSRGSTMWLRPSERFATRITTSSANETRPDLSALEAQVQKIVEELKSSSLETLRDATAELRLLAKHNMDNRIVIAQSGAIAYLVELLLSADSKIQENAVTALLNLSINDNNKNAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG | 829 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 11975833 | 11993163 | + | Hsped.08g11710.1 | Hepe08g1171 | 577143 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g1171 | 829 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 668 | 710 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | MobiDBLite | consensus disorder prediction | 331 | 393 | - | - | |
Hepe08g1171 | 829 | Pfam | Armadillo/beta-catenin-like repeat | 659 | 696 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | Pfam | Armadillo/beta-catenin-like repeat | 577 | 614 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | Pfam | Armadillo/beta-catenin-like repeat | 616 | 655 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | MobiDBLite | consensus disorder prediction | 346 | 385 | - | - | |
Hepe08g1171 | 829 | Gene3D | - | 621 | 723 | IPR011989 | - | |
Hepe08g1171 | 829 | SUPERFAMILY | ARM repeat | 545 | 818 | IPR016024 | - | |
Hepe08g1171 | 829 | ProSiteProfiles | U-box domain profile. | 235 | 309 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Hepe08g1171 | 829 | MobiDBLite | consensus disorder prediction | 446 | 498 | - | - | |
Hepe08g1171 | 829 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 310 | IPR013083 | - | |
Hepe08g1171 | 829 | Gene3D | - | 724 | 824 | IPR011989 | - | |
Hepe08g1171 | 829 | MobiDBLite | consensus disorder prediction | 418 | 501 | - | - | |
Hepe08g1171 | 829 | FunFam | RING-type E3 ubiquitin transferase | 235 | 310 | - | - | |
Hepe08g1171 | 829 | Pfam | U-box domain | 236 | 306 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Hepe08g1171 | 829 | SUPERFAMILY | RING/U-box | 224 | 312 | - | - | |
Hepe08g1171 | 829 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 586 | 628 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | Coils | Coil | 179 | 209 | - | - | |
Hepe08g1171 | 829 | MobiDBLite | consensus disorder prediction | 425 | 439 | - | - | |
Hepe08g1171 | 829 | CDD | RING-Ubox_PUB | 237 | 289 | IPR045210 | - | |
Hepe08g1171 | 829 | FunFam | RING-type E3 ubiquitin transferase | 529 | 824 | - | - | |
Hepe08g1171 | 829 | PANTHER | U BOX DOMAIN-CONTAINING | 29 | 822 | - | - | |
Hepe08g1171 | 829 | SMART | arm_5 | 780 | 820 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | SMART | arm_5 | 738 | 778 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | SMART | arm_5 | 657 | 697 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | SMART | arm_5 | 698 | 737 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | SMART | arm_5 | 616 | 656 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | SMART | arm_5 | 575 | 615 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | Coils | Coil | 539 | 559 | - | - | |
Hepe08g1171 | 829 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 709 | 750 | IPR000225 | GO:0005515(InterPro) | |
Hepe08g1171 | 829 | Gene3D | - | 523 | 620 | IPR011989 | - | |
Hepe08g1171 | 829 | SMART | Ubox_2 | 239 | 302 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g1284 | Hepe-Chr4:68419369 | Hepe08g1171 | Hepe-Chr8:11975833 | 2.46e-26 | dispersed | |
Hepe08g1171 | Hepe-Chr8:11975833 | Hepe10g0096 | Hepe-Chr10:891512 | 1.48e-23 | dispersed | |
Hepe03g2083 | Hepe-Chr3:78754612 | Hepe08g1171 | Hepe-Chr8:11975833 | 8.79e-73 | transposed | |
Hepe04g1283 | Hepe-Chr4:68413092 | Hepe08g1171 | Hepe-Chr8:11975833 | 2.98e-41 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g1171 | - | - | - | 0.0 |