Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1171 ATGGGGGTATCATTACTTAAAGTGCTTCTTAGACATATTTCATCATTTCTTCAACTTTCATCGTCTGACTACATAAATTTACAACCGACTCTGAAGTACTACCATAAAATAGAAGGGGTCTTGAAACTATTGAAGCCAATACTGGATGCAGTTGTTGATTCAGATATAGCTACCGATGAAGAGCTTACTAAGGCATTCGAAGAACTTGATCATTCAGTGGATGAACTAAGAGTGCTCTTTGAAAATTGGCAACCATTGTCAAGTAAAGTATACTTTGTACTGCAAAGTGAAGCATTAATATTAAAGATTGGGAAATCTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGCGTCCAAAAAATTAAGAATGTTGGAAAGGAAGAAATATCTTCTGTTATTAAAGATGCCATAAGGAACCAAGTAGAGGGTATTGCACCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTGAGCTTGAGATCAAATCAGGAAATCTTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAAAGTGCAGAACAAGCTGAAAATACTCGAGAAGCTGAGGACATTGATCAAATGGTTGCTCTTGTGACCCGTATGCATGAGCGACTTATTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGGGTTTTTATAAAAAATTGGATTGATCTGGGGCTCAATGTCTGCCCAAAGACTAGACAGACATTGGCTCACACGAATCTTATACCTAATTATACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTGAAATTGTCTGATCCCTCAAGGTCAGTGCACTTAAACGAGCTTTCGCCCCTTCTCGTTGGGAGCTTTGAGTCTGATACCCATCGAGAACCCCATTTTCCTCATTCCCCTGGCTACCAACCGATGTCCCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTTGCTCTCCCATTCTTTCTCTGAGGATTCCATGTCAAATGATGCTGGAGATGAAAGAGGGATTGATGTCAGTAGACTATTGCTTACAAGTTCGGAAGATCAAATGGCCAAATTGGAAGAAAATGGTTGCGATTTGGTTGCTAAACCATCTATGTCACCATCTAGAACCAATGTTCCAAATACCAATGAGGATGAACCGTCACATAGTCATAATAGAACTGCCTCCACCTCCAGTGCAGTTTCAAATGCTAATCTCTCTCGAGGAACATCAGGGGAAGCCAATGGAGCTTTACAGTTGTCAACGAACCAATCTGGGGAGGGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGAATACCAACCACAGAGAACCAGAGTTTCCACTCCGACTAGCTGACTCAAGATCTCGAGGTAGTACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCACTAGAATAACTACATCATCTGCTAATGAGACGAGGCCGGATCTTTCTGCGCTTGAAGCACAAGTTCAGAAGATTGTTGAGGAATTGAAGAGCAGTTCACTTGAAACTTTAAGAGATGCTACAGCTGAATTGCGGCTACTGGCCAAACATAATATGGACAACCGGATAGTGATTGCTCAATCTGGGGCCATTGCATATTTGGTTGAATTGCTTCTCTCTGCAGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAATGCTATTGCTCAGGCCAATGCAATTGAGCCTCTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCGAAGGAGAACTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTGTTGGGCAATGGAACTCCGAGGGGAAAGAAGGATGCAGCTACAGCTTTGTTTAATTTGTCAATATTCCATGAGAACAAGGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACAATTCCCGAGGGTAGGTCTGCAATTGGTCAGGAAGGTGGAATTCCCGTTCTGGTCGAGGTCGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTTTGCACAACAAGCAGTAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAAAAGGCCCAAGCACTTCTAAGCCATTTCAGAAGCCAGAGACATGGCAATTCAGGAAGAGGGTAA 2490 43.69 MGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGVLKLLKPILDAVVDSDIATDEELTKAFEELDHSVDELRVLFENWQPLSSKVYFVLQSEALILKIGKSSLDIFQLLQSSNENLPEELSSTSLEHCVQKIKNVGKEEISSVIKDAIRNQVEGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTREAEDIDQMVALVTRMHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGLNVCPKTRQTLAHTNLIPNYTVKALIANWCETNNVKLSDPSRSVHLNELSPLLVGSFESDTHREPHFPHSPGYQPMSPQSTRSAGSGKNLNSLGGTHRDGSSLLSHSFSEDSMSNDAGDERGIDVSRLLLTSSEDQMAKLEENGCDLVAKPSMSPSRTNVPNTNEDEPSHSHNRTASTSSAVSNANLSRGTSGEANGALQLSTNQSGEGKSEPLAAATSNTNHREPEFPLRLADSRSRGSTMWLRPSERFATRITTSSANETRPDLSALEAQVQKIVEELKSSSLETLRDATAELRLLAKHNMDNRIVIAQSGAIAYLVELLLSADSKIQENAVTALLNLSINDNNKNAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11975833 11993163 + Hsped.08g11710.1 Hepe08g1171 577143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1171 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 668 710 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 MobiDBLite consensus disorder prediction 331 393 - -
Hepe08g1171 829 Pfam Armadillo/beta-catenin-like repeat 659 696 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 Pfam Armadillo/beta-catenin-like repeat 577 614 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 Pfam Armadillo/beta-catenin-like repeat 616 655 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 MobiDBLite consensus disorder prediction 346 385 - -
Hepe08g1171 829 Gene3D - 621 723 IPR011989 -
Hepe08g1171 829 SUPERFAMILY ARM repeat 545 818 IPR016024 -
Hepe08g1171 829 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g1171 829 MobiDBLite consensus disorder prediction 446 498 - -
Hepe08g1171 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Hepe08g1171 829 Gene3D - 724 824 IPR011989 -
Hepe08g1171 829 MobiDBLite consensus disorder prediction 418 501 - -
Hepe08g1171 829 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Hepe08g1171 829 Pfam U-box domain 236 306 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g1171 829 SUPERFAMILY RING/U-box 224 312 - -
Hepe08g1171 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 586 628 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 Coils Coil 179 209 - -
Hepe08g1171 829 MobiDBLite consensus disorder prediction 425 439 - -
Hepe08g1171 829 CDD RING-Ubox_PUB 237 289 IPR045210 -
Hepe08g1171 829 FunFam RING-type E3 ubiquitin transferase 529 824 - -
Hepe08g1171 829 PANTHER U BOX DOMAIN-CONTAINING 29 822 - -
Hepe08g1171 829 SMART arm_5 780 820 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 SMART arm_5 738 778 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 SMART arm_5 657 697 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 SMART arm_5 698 737 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 SMART arm_5 616 656 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 SMART arm_5 575 615 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 Coils Coil 539 559 - -
Hepe08g1171 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 709 750 IPR000225 GO:0005515(InterPro)
Hepe08g1171 829 Gene3D - 523 620 IPR011989 -
Hepe08g1171 829 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1284 Hepe-Chr4:68419369 Hepe08g1171 Hepe-Chr8:11975833 2.46e-26 dispersed
Hepe08g1171 Hepe-Chr8:11975833 Hepe10g0096 Hepe-Chr10:891512 1.48e-23 dispersed
Hepe03g2083 Hepe-Chr3:78754612 Hepe08g1171 Hepe-Chr8:11975833 8.79e-73 transposed
Hepe04g1283 Hepe-Chr4:68413092 Hepe08g1171 Hepe-Chr8:11975833 2.98e-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1171 - - - 0.0