Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1181 ATGGCGGACGAGCAGCCCTCAGCCGCTAATCGCCGGAGGAGCAGAGGATCTGAGGCAACCGCCCGCCTTCAGGCTCTGGAACGTCTCAAAGCCATCCGCACTGGCGGCCGTCGATCGGAAGCCGGTGGTGGTTTCCAAGTTAAGTTGGAGAACCCTATCTACGATACGATTCCCGAGGATGAGTACGATGCTCTCGTTGCTAAGCGTCGTGAAGAAGCCCGAGGGTTTATTGTTGACGACGAGGGTCTTGGATATGGAGACGAAGGGGAAGAAGAGGATTGGTCCAAAGCTGGGGTTTGTTCCTCCGATGAGTCTGATGGTGGGCCTGAGAAACCTAAGAAGAAGAAAGCAGAGAAGAAAGAAGCGCAGCCGAAGAAGCCCTCTTCTTCTTCTCTATCGGCGGCGGCGGCAATGATGGGGAAACAGAAGCTTTCTTCGATGTTCACTTCATCCATCTTTAGGAAAGCGGGTAGAGACGATAAGGCTAAAGGGTTGGCTTGTGACAGTATTGTCGATGATGTGATTGCAGAATTTGCGCCGGATGAGACTGATAGAGAGCGGCGTAGAAAGGGGAAAATCGGAGCTACACCGATTTCGAGGACTTTTGCTTCTGTTACTGCCGCGAAGTGTGAGGGATTAACTGCTCGAAGTCTTAATTTGAATGGTGGATCTGAATTGATTAAGGATGCTGTTGTTTCAAACACTGATTTGGAGCCTGTGCGAGCTGGTATAGAGGTCCACGAAAATGGGGAAACTAAGGAATTTGATGTAAAGAAGGATTTAAATTCTGAAAACAATGTGGATCTGGTTGGGCAATCACACAGTTCTTCGATCGAGGAAGATGTAATTGAAGATACTATGTCGATTATGGTTGAAACAAAGGCAGAACCGTTAGTGAAGAAGGAGCCGGTTTGTACTTTGAATGCTAAGATTAGCGAAGAGAAAGACCCAGCTTTGAGTGCTACTGCGGGATGGAAAGCAGTGAGGAGTGAAGGGAGTGGAAATGTTGATTCTGCTGCAGCAGATATTTCTGAAGAGAAACCCGATTTCGACATTAACGCAGACGGCTCCCTGCCTTTCTACGTAGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTGTTTGGCAAGGTTAAAGCTGGAGCTACGTTCCACAGTTGTTGTGTGGTGGTGAAAAACATGCAAAGAAGCATATATGCTATTCCAAGTGCCTCTTTTCTTCAGTCGGATGAGATGTTGGAGCTTCAGAACGATGCTGAACATTCTAAGCTTTCTGCTACAGATCTGCGTACCAAGTTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATAGCTAAGCAGTTGCTAGATATCAATGCTTCAACATTTAATATGACACCGGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTGCGGGGGACAATTATGTGCTTAAGGTTAATTACCCATTCAAGCACCCCCCACTTCCTGCTGATCTAAAAGGAGAATCATTCTGTGCTCTCTTAGGAACACATCACAGTGCCTTAGAGCTTCTCCTCATTAAAAGGAAAATAATGGGCCCTTCCTGGTTGTCAATTTCAAAATTTTCTTCCTGTCCTGGTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTAGACTCTCCAAAAGATGTTCAAAGTTCAACTTCATCAAGTTTTACTTTGGAGATTCCTTCTATGATCGTCAGTGCAATAAACATAAAGACCATCATTAATGAAAGGCAGAATGTCAACGAAATTGTGTCTGCATCTGTTATAAGCTGTCAAAGAGCGAAGATTGATGGTCCCATGTTGGCTACAGAATGGAAAAAACCTGGTATGCTTAGACATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCACAGATAGAAATTTGAAGGCTGGATCAAATGTTTTAATCTGCGAGGGAAATGAACGGGCCTTGTTGAATCGATTAATGATTGAATTATTCAAATTGGATAGTGATGTGATTGTTGGACACAATATTTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGTAGCACGTGGTCCAAAATAGGCCGCCTTAAGCGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGAGCAAGTCCAGGAGTCATGTCTTGCATTGCTGGTAGACTCTTATGTGATACGTACTTGTCTTCCCGTGACCTATTGAAAGAGATAAGTTATTCTTTGACGGAGCTAGCAAAGACTCAACTTAATAAGGACCGCAAAGAAGTCACTCCACATGATATTCCAAGAATGTACCAAGCATCAGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGTCAGTTGACTAATATCAGTGGTAACCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCGGAAAGTATATTGTTCCCGATAAGATTTCATCTTATGTGAAGGAAAAAAAGACGGTAAAAAAGAGAACAATTCATGGTTCTGAGGAAAAAAATGTTGATGAATTTGATTTAGATGAGGCAAATGTTGAAGCTCCGAATGCTGAAAGTGGTAAAGGCAAAAAGCGATCCTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGAGGCTTATATGATAAATATATATTGCTTCTGGACTTCAACAGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGCTCCTCGTCTGCCATCAAGTAAAGTGACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAAAGGTGAAGTCATGGATGAAGAATGCATCTGGTCTCAAGCTTCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCAAACAGTATGTATGGATGCCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTCCAGAATAATCTGAACCTAGAGGTAATTTATGGTGATACTGATTCAATAATGATTCATAGTGGACTGGATGATATTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTCAACAAAAAGTACAAGTGTTTAGAAATTGATCTCGATGGTTTGTATAAGAGAATGTTGCTTCTGAAGAAAAAGAAATATGCAGCTGTAAAGTTGCAGTTCAAGGATGGAATGGAATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGTCGTGACTGGAGTTTATTGTCGAAGGAATTAGGTGATTTCTGCTTGAGTCAAATATTGTCGGGAGGGTCATGTGATGATGTAATTGAATCAATACATGACTCTCTTATGAAGATACAAGAGGATATGAGGAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAACCACCTGAAGCCTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCACAAAGGTTAAAACAAATGGGCTATTCTACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTGCTGTGAACAGGGATCTACTTCTGGTGGTTCTACAGGCCTTGCTCAGCGGGCTAGACATCCTGATGAATTGAAAAAGGAAGATGGAAAATGGATGATTGACATCGATTACTACCTGGCACAGCAGATTCACCCTGTGGTTTCTCGTCTGTGTGCCTCAATTCAGGGCACTAGCCCAGAACGCTTGGCCGACTGTCTGGGGCTTGATTCATCAAAGTTCCAGAACAAATCAAGTGAAGTTTCCCGAAGTGATGTCTCCTCTTCCCTCCTCTGTTCTGTAAATGATGAAGAAAGGTATCAGGGCTGTGAACCACTGACATTAACTTGCCCCAGCTGTTTTGGTACTTTTGAGTGTTCTGCTATCTTTGGTTCTATATACAAATCTACAAATGTAAAGCAAGAAAGGCCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGCATTGTCCAAAATGTCCCGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTTCCAACCAGGTAAAAAGGCAAGTAGAGAGGTTCATTTCAATGTATTACAAGGGCTTACTGATGTGCGAGGATGAAACCTGCAAATATACCACACGTGCTGTCAATCTTCGAGTTAAGGGCGACTCTGAGAAAGGAACCATCTGCCCCAACTATCCTCAATGCAATGGGCGTCTTATAAGACAATACACAGAAGCGGATTTGTACAAGCAGCTTTCGTATTTTTGCCACGTGTTGGATACCGTACGTTGTATGGAAAAGTTGGAGGTTCATGAAAGGGTAACTTTAGAGAGAGAAATGGCGAAAATTCGGCCATTTGTCGAGTTAGCAGCAACGACAATTCAAAATATTCGAGATCGCAGTGCATATGGTTGGGTGCAGCTGCAGGATTTTCTAGTTACAGTTTGA 4626 43.0 MADEQPSAANRRRSRGSEATARLQALERLKAIRTGGRRSEAGGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDEGLGYGDEGEEEDWSKAGVCSSDESDGGPEKPKKKKAEKKEAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKAGRDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGKIGATPISRTFASVTAAKCEGLTARSLNLNGGSELIKDAVVSNTDLEPVRAGIEVHENGETKEFDVKKDLNSENNVDLVGQSHSSSIEEDVIEDTMSIMVETKAEPLVKKEPVCTLNAKISEEKDPALSATAGWKAVRSEGSGNVDSAAADISEEKPDFDINADGSLPFYVVDAHEELFGANMGTVYLFGKVKAGATFHSCCVVVKNMQRSIYAIPSASFLQSDEMLELQNDAEHSKLSATDLRTKLQEVTAGLKNEIAKQLLDINASTFNMTPVKRKYAFERQDIPAGDNYVLKVNYPFKHPPLPADLKGESFCALLGTHHSALELLLIKRKIMGPSWLSISKFSSCPGSQRVSWCKFEVIVDSPKDVQSSTSSSFTLEIPSMIVSAINIKTIINERQNVNEIVSASVISCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESTDRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVIVGHNISGFDLDVLLHRAQFCRVPSSTWSKIGRLKRSVMPKLGKGGSIFGSGASPGVMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHDIPRMYQASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAGKYIVPDKISSYVKEKKTVKKRTIHGSEEKNVDEFDLDEANVEAPNAESGKGKKRSSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGVAPRLPSSKVTGVLPELLKNLVQRRRKVKSWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDIGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMEYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCDDVIESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSTGLAQRARHPDELKKEDGKWMIDIDYYLAQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKSSEVSRSDVSSSLLCSVNDEERYQGCEPLTLTCPSCFGTFECSAIFGSIYKSTNVKQERPVDEPTSKFWNNLHCPKCPDEANAGRMTPGMISNQVKRQVERFISMYYKGLLMCEDETCKYTTRAVNLRVKGDSEKGTICPNYPQCNGRLIRQYTEADLYKQLSYFCHVLDTVRCMEKLEVHERVTLEREMAKIRPFVELAATTIQNIRDRSAYGWVQLQDFLVTV 1541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12100462 12119810 - Hsped.08g11810.1 Hepe08g1181 577153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1181 1541 SUPERFAMILY Ribonuclease H-like 459 854 IPR012337 -
Hepe08g1181 1541 Gene3D - 360 559 - -
Hepe08g1181 1541 Pfam DNA polymerase family B, exonuclease domain 514 767 IPR006133 -
Hepe08g1181 1541 FunFam DNA polymerase 971 1020 - -
Hepe08g1181 1541 Gene3D Helix hairpin bin 976 1019 - -
Hepe08g1181 1541 MobiDBLite consensus disorder prediction 77 137 - -
Hepe08g1181 1541 CDD POLBc_alpha 906 1309 IPR045846 GO:0003887(InterPro)|GO:1902975(InterPro)
Hepe08g1181 1541 MobiDBLite consensus disorder prediction 106 125 - -
Hepe08g1181 1541 PRINTS DNA-directed DNA-polymerase family B signature 1059 1067 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Hepe08g1181 1541 PRINTS DNA-directed DNA-polymerase family B signature 930 943 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Hepe08g1181 1541 PRINTS DNA-directed DNA-polymerase family B signature 1006 1018 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Hepe08g1181 1541 Pfam DNA polymerase alpha subunit p180 N terminal 26 94 IPR024647 -
Hepe08g1181 1541 ProSitePatterns DNA polymerase family B signature. 1061 1069 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Hepe08g1181 1541 MobiDBLite consensus disorder prediction 890 911 - -
Hepe08g1181 1541 Gene3D - 573 889 IPR036397 GO:0003676(InterPro)
Hepe08g1181 1541 NCBIfam DNA polymerase (pol2) 52 1291 - -
Hepe08g1181 1541 Gene3D DNA Polymerase alpha, zinc finger 1332 1526 IPR038256 -
Hepe08g1181 1541 SMART polmehr3 573 1073 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Hepe08g1181 1541 CDD DNA_polB_alpha_exo 573 824 - -
Hepe08g1181 1541 FunFam DNA polymerase 1332 1527 - -
Hepe08g1181 1541 Gene3D Palm domain of DNA polymerase 900 1123 IPR023211 -
Hepe08g1181 1541 Pfam DNA polymerase family B 833 1294 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Hepe08g1181 1541 FunFam DNA polymerase 1137 1323 - -
Hepe08g1181 1541 Gene3D - 400 526 - -
Hepe08g1181 1541 Pfam DNA Polymerase alpha zinc finger 1333 1536 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
Hepe08g1181 1541 MobiDBLite consensus disorder prediction 1 22 - -
Hepe08g1181 1541 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1539 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
Hepe08g1181 1541 Gene3D - 1137 1323 IPR042087 -
Hepe08g1181 1541 MobiDBLite consensus disorder prediction 1 18 - -
Hepe08g1181 1541 SUPERFAMILY DNA/RNA polymerases 857 1309 IPR043502 -
Hepe08g1181 1541 Coils Coil 1087 1107 - -
Hepe08g1181 1541 FunFam DNA polymerase 573 887 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1181 Hepe-Chr8:12100462 Hepe08g2317 Hepe-Chr8:63026160 1.60e-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1181 K02320 - csv:101211201 2622.81