Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g1181 | ATGGCGGACGAGCAGCCCTCAGCCGCTAATCGCCGGAGGAGCAGAGGATCTGAGGCAACCGCCCGCCTTCAGGCTCTGGAACGTCTCAAAGCCATCCGCACTGGCGGCCGTCGATCGGAAGCCGGTGGTGGTTTCCAAGTTAAGTTGGAGAACCCTATCTACGATACGATTCCCGAGGATGAGTACGATGCTCTCGTTGCTAAGCGTCGTGAAGAAGCCCGAGGGTTTATTGTTGACGACGAGGGTCTTGGATATGGAGACGAAGGGGAAGAAGAGGATTGGTCCAAAGCTGGGGTTTGTTCCTCCGATGAGTCTGATGGTGGGCCTGAGAAACCTAAGAAGAAGAAAGCAGAGAAGAAAGAAGCGCAGCCGAAGAAGCCCTCTTCTTCTTCTCTATCGGCGGCGGCGGCAATGATGGGGAAACAGAAGCTTTCTTCGATGTTCACTTCATCCATCTTTAGGAAAGCGGGTAGAGACGATAAGGCTAAAGGGTTGGCTTGTGACAGTATTGTCGATGATGTGATTGCAGAATTTGCGCCGGATGAGACTGATAGAGAGCGGCGTAGAAAGGGGAAAATCGGAGCTACACCGATTTCGAGGACTTTTGCTTCTGTTACTGCCGCGAAGTGTGAGGGATTAACTGCTCGAAGTCTTAATTTGAATGGTGGATCTGAATTGATTAAGGATGCTGTTGTTTCAAACACTGATTTGGAGCCTGTGCGAGCTGGTATAGAGGTCCACGAAAATGGGGAAACTAAGGAATTTGATGTAAAGAAGGATTTAAATTCTGAAAACAATGTGGATCTGGTTGGGCAATCACACAGTTCTTCGATCGAGGAAGATGTAATTGAAGATACTATGTCGATTATGGTTGAAACAAAGGCAGAACCGTTAGTGAAGAAGGAGCCGGTTTGTACTTTGAATGCTAAGATTAGCGAAGAGAAAGACCCAGCTTTGAGTGCTACTGCGGGATGGAAAGCAGTGAGGAGTGAAGGGAGTGGAAATGTTGATTCTGCTGCAGCAGATATTTCTGAAGAGAAACCCGATTTCGACATTAACGCAGACGGCTCCCTGCCTTTCTACGTAGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTGTTTGGCAAGGTTAAAGCTGGAGCTACGTTCCACAGTTGTTGTGTGGTGGTGAAAAACATGCAAAGAAGCATATATGCTATTCCAAGTGCCTCTTTTCTTCAGTCGGATGAGATGTTGGAGCTTCAGAACGATGCTGAACATTCTAAGCTTTCTGCTACAGATCTGCGTACCAAGTTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATAGCTAAGCAGTTGCTAGATATCAATGCTTCAACATTTAATATGACACCGGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTGCGGGGGACAATTATGTGCTTAAGGTTAATTACCCATTCAAGCACCCCCCACTTCCTGCTGATCTAAAAGGAGAATCATTCTGTGCTCTCTTAGGAACACATCACAGTGCCTTAGAGCTTCTCCTCATTAAAAGGAAAATAATGGGCCCTTCCTGGTTGTCAATTTCAAAATTTTCTTCCTGTCCTGGTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTAGACTCTCCAAAAGATGTTCAAAGTTCAACTTCATCAAGTTTTACTTTGGAGATTCCTTCTATGATCGTCAGTGCAATAAACATAAAGACCATCATTAATGAAAGGCAGAATGTCAACGAAATTGTGTCTGCATCTGTTATAAGCTGTCAAAGAGCGAAGATTGATGGTCCCATGTTGGCTACAGAATGGAAAAAACCTGGTATGCTTAGACATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCACAGATAGAAATTTGAAGGCTGGATCAAATGTTTTAATCTGCGAGGGAAATGAACGGGCCTTGTTGAATCGATTAATGATTGAATTATTCAAATTGGATAGTGATGTGATTGTTGGACACAATATTTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGTAGCACGTGGTCCAAAATAGGCCGCCTTAAGCGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGAGCAAGTCCAGGAGTCATGTCTTGCATTGCTGGTAGACTCTTATGTGATACGTACTTGTCTTCCCGTGACCTATTGAAAGAGATAAGTTATTCTTTGACGGAGCTAGCAAAGACTCAACTTAATAAGGACCGCAAAGAAGTCACTCCACATGATATTCCAAGAATGTACCAAGCATCAGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGTCAGTTGACTAATATCAGTGGTAACCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCGGAAAGTATATTGTTCCCGATAAGATTTCATCTTATGTGAAGGAAAAAAAGACGGTAAAAAAGAGAACAATTCATGGTTCTGAGGAAAAAAATGTTGATGAATTTGATTTAGATGAGGCAAATGTTGAAGCTCCGAATGCTGAAAGTGGTAAAGGCAAAAAGCGATCCTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGAGGCTTATATGATAAATATATATTGCTTCTGGACTTCAACAGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGCTCCTCGTCTGCCATCAAGTAAAGTGACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAAAGGTGAAGTCATGGATGAAGAATGCATCTGGTCTCAAGCTTCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCAAACAGTATGTATGGATGCCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTCCAGAATAATCTGAACCTAGAGGTAATTTATGGTGATACTGATTCAATAATGATTCATAGTGGACTGGATGATATTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTCAACAAAAAGTACAAGTGTTTAGAAATTGATCTCGATGGTTTGTATAAGAGAATGTTGCTTCTGAAGAAAAAGAAATATGCAGCTGTAAAGTTGCAGTTCAAGGATGGAATGGAATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGTCGTGACTGGAGTTTATTGTCGAAGGAATTAGGTGATTTCTGCTTGAGTCAAATATTGTCGGGAGGGTCATGTGATGATGTAATTGAATCAATACATGACTCTCTTATGAAGATACAAGAGGATATGAGGAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAACCACCTGAAGCCTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCACAAAGGTTAAAACAAATGGGCTATTCTACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTGCTGTGAACAGGGATCTACTTCTGGTGGTTCTACAGGCCTTGCTCAGCGGGCTAGACATCCTGATGAATTGAAAAAGGAAGATGGAAAATGGATGATTGACATCGATTACTACCTGGCACAGCAGATTCACCCTGTGGTTTCTCGTCTGTGTGCCTCAATTCAGGGCACTAGCCCAGAACGCTTGGCCGACTGTCTGGGGCTTGATTCATCAAAGTTCCAGAACAAATCAAGTGAAGTTTCCCGAAGTGATGTCTCCTCTTCCCTCCTCTGTTCTGTAAATGATGAAGAAAGGTATCAGGGCTGTGAACCACTGACATTAACTTGCCCCAGCTGTTTTGGTACTTTTGAGTGTTCTGCTATCTTTGGTTCTATATACAAATCTACAAATGTAAAGCAAGAAAGGCCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGCATTGTCCAAAATGTCCCGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTTCCAACCAGGTAAAAAGGCAAGTAGAGAGGTTCATTTCAATGTATTACAAGGGCTTACTGATGTGCGAGGATGAAACCTGCAAATATACCACACGTGCTGTCAATCTTCGAGTTAAGGGCGACTCTGAGAAAGGAACCATCTGCCCCAACTATCCTCAATGCAATGGGCGTCTTATAAGACAATACACAGAAGCGGATTTGTACAAGCAGCTTTCGTATTTTTGCCACGTGTTGGATACCGTACGTTGTATGGAAAAGTTGGAGGTTCATGAAAGGGTAACTTTAGAGAGAGAAATGGCGAAAATTCGGCCATTTGTCGAGTTAGCAGCAACGACAATTCAAAATATTCGAGATCGCAGTGCATATGGTTGGGTGCAGCTGCAGGATTTTCTAGTTACAGTTTGA | 4626 | 43.0 | MADEQPSAANRRRSRGSEATARLQALERLKAIRTGGRRSEAGGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDEGLGYGDEGEEEDWSKAGVCSSDESDGGPEKPKKKKAEKKEAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKAGRDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGKIGATPISRTFASVTAAKCEGLTARSLNLNGGSELIKDAVVSNTDLEPVRAGIEVHENGETKEFDVKKDLNSENNVDLVGQSHSSSIEEDVIEDTMSIMVETKAEPLVKKEPVCTLNAKISEEKDPALSATAGWKAVRSEGSGNVDSAAADISEEKPDFDINADGSLPFYVVDAHEELFGANMGTVYLFGKVKAGATFHSCCVVVKNMQRSIYAIPSASFLQSDEMLELQNDAEHSKLSATDLRTKLQEVTAGLKNEIAKQLLDINASTFNMTPVKRKYAFERQDIPAGDNYVLKVNYPFKHPPLPADLKGESFCALLGTHHSALELLLIKRKIMGPSWLSISKFSSCPGSQRVSWCKFEVIVDSPKDVQSSTSSSFTLEIPSMIVSAINIKTIINERQNVNEIVSASVISCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESTDRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVIVGHNISGFDLDVLLHRAQFCRVPSSTWSKIGRLKRSVMPKLGKGGSIFGSGASPGVMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHDIPRMYQASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAGKYIVPDKISSYVKEKKTVKKRTIHGSEEKNVDEFDLDEANVEAPNAESGKGKKRSSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGVAPRLPSSKVTGVLPELLKNLVQRRRKVKSWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDIGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMEYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCDDVIESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSTGLAQRARHPDELKKEDGKWMIDIDYYLAQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKSSEVSRSDVSSSLLCSVNDEERYQGCEPLTLTCPSCFGTFECSAIFGSIYKSTNVKQERPVDEPTSKFWNNLHCPKCPDEANAGRMTPGMISNQVKRQVERFISMYYKGLLMCEDETCKYTTRAVNLRVKGDSEKGTICPNYPQCNGRLIRQYTEADLYKQLSYFCHVLDTVRCMEKLEVHERVTLEREMAKIRPFVELAATTIQNIRDRSAYGWVQLQDFLVTV | 1541 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 12100462 | 12119810 | - | Hsped.08g11810.1 | Hepe08g1181 | 577153 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g1181 | 1541 | SUPERFAMILY | Ribonuclease H-like | 459 | 854 | IPR012337 | - | |
Hepe08g1181 | 1541 | Gene3D | - | 360 | 559 | - | - | |
Hepe08g1181 | 1541 | Pfam | DNA polymerase family B, exonuclease domain | 514 | 767 | IPR006133 | - | |
Hepe08g1181 | 1541 | FunFam | DNA polymerase | 971 | 1020 | - | - | |
Hepe08g1181 | 1541 | Gene3D | Helix hairpin bin | 976 | 1019 | - | - | |
Hepe08g1181 | 1541 | MobiDBLite | consensus disorder prediction | 77 | 137 | - | - | |
Hepe08g1181 | 1541 | CDD | POLBc_alpha | 906 | 1309 | IPR045846 | GO:0003887(InterPro)|GO:1902975(InterPro) | |
Hepe08g1181 | 1541 | MobiDBLite | consensus disorder prediction | 106 | 125 | - | - | |
Hepe08g1181 | 1541 | PRINTS | DNA-directed DNA-polymerase family B signature | 1059 | 1067 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Hepe08g1181 | 1541 | PRINTS | DNA-directed DNA-polymerase family B signature | 930 | 943 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Hepe08g1181 | 1541 | PRINTS | DNA-directed DNA-polymerase family B signature | 1006 | 1018 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Hepe08g1181 | 1541 | Pfam | DNA polymerase alpha subunit p180 N terminal | 26 | 94 | IPR024647 | - | |
Hepe08g1181 | 1541 | ProSitePatterns | DNA polymerase family B signature. | 1061 | 1069 | IPR017964 | GO:0000166(InterPro)|GO:0003676(InterPro) | |
Hepe08g1181 | 1541 | MobiDBLite | consensus disorder prediction | 890 | 911 | - | - | |
Hepe08g1181 | 1541 | Gene3D | - | 573 | 889 | IPR036397 | GO:0003676(InterPro) | |
Hepe08g1181 | 1541 | NCBIfam | DNA polymerase (pol2) | 52 | 1291 | - | - | |
Hepe08g1181 | 1541 | Gene3D | DNA Polymerase alpha, zinc finger | 1332 | 1526 | IPR038256 | - | |
Hepe08g1181 | 1541 | SMART | polmehr3 | 573 | 1073 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Hepe08g1181 | 1541 | CDD | DNA_polB_alpha_exo | 573 | 824 | - | - | |
Hepe08g1181 | 1541 | FunFam | DNA polymerase | 1332 | 1527 | - | - | |
Hepe08g1181 | 1541 | Gene3D | Palm domain of DNA polymerase | 900 | 1123 | IPR023211 | - | |
Hepe08g1181 | 1541 | Pfam | DNA polymerase family B | 833 | 1294 | IPR006134 | GO:0000166(InterPro)|GO:0003677(InterPro) | |
Hepe08g1181 | 1541 | FunFam | DNA polymerase | 1137 | 1323 | - | - | |
Hepe08g1181 | 1541 | Gene3D | - | 400 | 526 | - | - | |
Hepe08g1181 | 1541 | Pfam | DNA Polymerase alpha zinc finger | 1333 | 1536 | IPR015088 | GO:0003887(InterPro)|GO:0006260(InterPro) | |
Hepe08g1181 | 1541 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Hepe08g1181 | 1541 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 14 | 1539 | - | GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER) | |
Hepe08g1181 | 1541 | Gene3D | - | 1137 | 1323 | IPR042087 | - | |
Hepe08g1181 | 1541 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Hepe08g1181 | 1541 | SUPERFAMILY | DNA/RNA polymerases | 857 | 1309 | IPR043502 | - | |
Hepe08g1181 | 1541 | Coils | Coil | 1087 | 1107 | - | - | |
Hepe08g1181 | 1541 | FunFam | DNA polymerase | 573 | 887 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe08g1181 | Hepe-Chr8:12100462 | Hepe08g2317 | Hepe-Chr8:63026160 | 1.60e-25 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g1181 | K02320 | - | csv:101211201 | 2622.81 |