Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1197 ATGTCTTCAATGTTCTATAGATGGAATCCTTTAAGACTGATCATCCAGGGGCTGCTATTCATCTCATTGTTGAGGTTGAATTATGCATCCACGGATCCTGATGTGGAAGGAGAAGCTTTGGTTGATTTGTTAGGGGCACTGAATGATTCCAATCATCACATAACTGATTGGAATTATCATTTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAATGTCACATCCTTGAGCTTGGGATCAGCAGGATTTTCAGGATCACTTTCTCATTCAATTACCAAACTGAAATTTTTGGCCAGCCTGGATTTGCAGAATAATAATATAGCAGGTGCTCTACCAGATTATCTAGCTAACATGACCCAGCTGCAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTATACCTGCGGCTTGGGGTCAACTTGTTGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCACAATTCTTTTCAATTCCAATGTTCAACTTTTCAGGTACTGGTTTAAATTGTGGCTTTAGGTTGGATAAACCTTGTGTTTCTACCTCTCCCCATCGAGCTTCTGTAAAGAATTCAAAGTTTGGGGTAGTGGCAAGTACTGCAAGTTGTGGGGGATTCATACTTCTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTACATGCATAAGCTTAAGGATTCTATGTTTGTTGATGTTGCTGGTGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCGCTGCGGGAAATCCAACTCGCTACCGATAACTTCAATGAAACGAACATCATTGGGCAAGGAGGGTTTGGAAAAGTATATAAAGGCATCCTCTCAGATGCCTCCAAAGTGGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGTGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCAGTGCATAGAAATCTCCTTCGGTTGATTGGATTCTGCACAACCACAACAGAGAGAATACTTGTTTATCCATTCATGCAGAATCTTAGCGTGGCGCATCGCTTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGACTGGGGCACGAGGAAACGGATTGCTTTTGGTGCAGCTAATGGTTTGGAGTACTTGCACGAGCATTGTAATCCTAAGATCATTCATCGAGATCTCAAGGCTGCAAATATCTTATTAGACGATGAGTTTGAAGCTGTTCTTGGAGATTTTGGGCTGGCCAAGCTAGTTGATACTAAATTGACTCATATTACCACTCAAGTGCGTGGTACAATGGGCCACATTGCCCCAGAATACTTGTCCACAGGAAAATCGTCCGAAAAGACAGATGTTTTTGGATATGGTATAACCCTTCTTGAACTTGTCACTGGTGAGCGAGCAATAGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGTTGCAAAGGGAGAATAGGCTTGAAGATGTTGTGGACCAAAACTTAAAGAGCTACGACCCGAAAGAAGTGGAAAACATAGTTCAGGTGGCATTGCTTTGCACTCAAAGTTCACCAGAGGAGCGGCCGACAATGGCGGAAGTTGTGAATCTACTACATGGAGAAGGGCTGGCAGATAGGTGGGCAGATTGGATGCAGCTTGAAGAAGAGGTAAGAGATCAGGAAGTGTCCCTTTTGTGTCACCAATTTGTTTGGGGTGAAGAGTCAAGCCATGATCAAGAAGCCATACAATTGTCTAAAGCCAGATAG 1791 42.49 MSSMFYRWNPLRLIIQGLLFISLLRLNYASTDPDVEGEALVDLLGALNDSNHHITDWNYHFVSPCFSWSHITCRNGNVTSLSLGSAGFSGSLSHSITKLKFLASLDLQNNNIAGALPDYLANMTQLQNLNLANNNFNGPIPAAWGQLVGLKHLDLSDNNLTGEVPAQFFSIPMFNFSGTGLNCGFRLDKPCVSTSPHRASVKNSKFGVVASTASCGGFILLSIGAFFAYRCFYMHKLKDSMFVDVAGEDECKLCFGQIRRFSLREIQLATDNFNETNIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTTERILVYPFMQNLSVAHRLRDLKPGERSLDWGTRKRIAFGAANGLEYLHEHCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTKLTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDQNLKSYDPKEVENIVQVALLCTQSSPEERPTMAEVVNLLHGEGLADRWADWMQLEEEVRDQEVSLLCHQFVWGEESSHDQEAIQLSKAR 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12341898 12348372 + Hsped.08g11970.1 Hepe08g1197 577169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1197 596 SMART serkin_6 273 546 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g1197 596 Gene3D Ribonuclease Inhibitor 33 193 IPR032675 -
Hepe08g1197 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g1197 596 FunFam Somatic embryogenesis receptor kinase 1 242 349 - -
Hepe08g1197 596 SUPERFAMILY Protein kinase-like (PK-like) 254 546 IPR011009 -
Hepe08g1197 596 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 21 594 - -
Hepe08g1197 596 FunFam Somatic embryogenesis receptor-like kinase 1 350 566 - -
Hepe08g1197 596 ProSiteProfiles Protein kinase domain profile. 273 550 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g1197 596 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Hepe08g1197 596 SUPERFAMILY L domain-like 37 172 - -
Hepe08g1197 596 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Hepe08g1197 596 Pfam Protein tyrosine and serine/threonine kinase 277 545 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g1197 596 FunFam Leucine-rich repeat receptor-like kinase 35 144 - -
Hepe08g1197 596 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515(InterPro)
Hepe08g1197 596 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524(InterPro)
Hepe08g1197 596 Gene3D Transferase(Phosphotransferase) domain 1 350 565 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0624 Hepe-Chr7:6876850 Hepe08g1197 Hepe-Chr8:12341898 4.10e-196 dispersed
Hepe07g0626 Hepe-Chr7:6891389 Hepe08g1197 Hepe-Chr8:12341898 3.85e-12 dispersed
Hepe07g0627 Hepe-Chr7:6917442 Hepe08g1197 Hepe-Chr8:12341898 1.59e-107 dispersed
Hepe08g1197 Hepe-Chr8:12341898 Hepe10g0030 Hepe-Chr10:283159 1.11e-126 dispersed
Hepe08g1197 Hepe-Chr8:12341898 Hepe10g1017 Hepe-Chr10:40366415 1.90e-210 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73060 PF00069 Pkinase 1.20E-44 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1197 - - - 0.0