Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1220 ATGGAAGGATCTCCTTCGCCATTGAAGCTCTACTCCTACTGGGCAAGCACTTGTGCTCAACGTGTTCGAATTGCCCTCAATTTCAAGGGGCTAAGCTTCGAGTACAAAGCTGTTGACATTATGAAGGGAGAGCATTTGAGTCCTGACTATCTAAAGCTCAATCCTGTTGGTTTTGTACCTGCTCTTGTGGATGGGGATATTCTCATTGCTGACTCTTTTGCTATAATAATGTATTTGGAAGAAAAGTATCCTCAGCATCCTTTGTTGCCTAGTGATCTTCATAAAAGGGCAATTAATTACCAGGCTGCAAATATTGTTTCTTCAAGCATACAGCCTCTTCAAAATCTAATTGTTGAGAATTACATTGAGGAAAAATGTGGCCGAGAGGAGAAACTTTCTTGGGTTCATATGATCATCGGAAAAGGGTTTTTAGCACTCGAGAAGTTGCTAAAGGTTCATGCTGGAAAATTTGCTACTGGAGACGAAATTTATCTGGCAGACTTGTTTTTGGCACCTCAACTTTACCGCGCCATTGAAACATTCAATGTTGACATGTCGAAGTTTCCACTTTTATCAAGATTGTATGAGGAATACAAGGAGGTACCAGCATTTCAAAATGCAGCACCAGAGAATCAACCTGATGCAGATCCTAATTCTCAAAGCTCAGACTAA 672 40.62 MEGSPSPLKLYSYWASTCAQRVRIALNFKGLSFEYKAVDIMKGEHLSPDYLKLNPVGFVPALVDGDILIADSFAIIMYLEEKYPQHPLLPSDLHKRAINYQAANIVSSSIQPLQNLIVENYIEEKCGREEKLSWVHMIIGKGFLALEKLLKVHAGKFATGDEIYLADLFLAPQLYRAIETFNVDMSKFPLLSRLYEEYKEVPAFQNAAPENQPDADPNSQSSD 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12783308 12787804 + Hsped.08g12200.1 Hepe08g1220 577192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1220 223 Gene3D Glutaredoxin 6 90 - -
Hepe08g1220 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 87 IPR004045 -
Hepe08g1220 223 Pfam Glutathione S-transferase, C-terminal domain 129 203 IPR004046 -
Hepe08g1220 223 FunFam Maleylacetoacetate isomerase 91 218 - -
Hepe08g1220 223 PANTHER MALEYLACETOACETATE ISOMERASE 8 215 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Hepe08g1220 223 SUPERFAMILY GST C-terminal domain-like 87 215 IPR036282 -
Hepe08g1220 223 CDD GST_C_Zeta 93 212 IPR034330 -
Hepe08g1220 223 Gene3D - 91 218 - -
Hepe08g1220 223 Pfam Glutathione S-transferase, N-terminal domain 10 86 IPR004045 -
Hepe08g1220 223 SUPERFAMILY Thioredoxin-like 5 90 IPR036249 -
Hepe08g1220 223 NCBIfam maleylacetoacetate isomerase 9 215 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Hepe08g1220 223 SFLD Main (cytGST) 8 199 - -
Hepe08g1220 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 217 IPR010987 -
Hepe08g1220 223 FunFam Glutathione S-transferase Z1 6 90 - -
Hepe08g1220 223 SFLD Glutathione Transferase (cytosolic) 8 199 IPR040079 -
Hepe08g1220 223 CDD GST_N_Zeta 8 80 IPR034333 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0758 Hepe-Chr7:9120852 Hepe08g1220 Hepe-Chr8:12783308 4.87e-11 dispersed
Hepe08g1220 Hepe-Chr8:12783308 Hepe10g0172 Hepe-Chr10:1745951 1.12e-12 dispersed
Hepe08g1220 Hepe-Chr8:12783308 Hepe08g1222 Hepe-Chr8:12819996 3.69e-113 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1220 K01800 - csv:116401624 372.474