Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1241 ATGGATGTGGAGGCTTCGAAGAATGGCACAGACGATACAATCGTCTGTTATGCGCCAACGATGATCACTACAAATGGGGTGTGGCAAGGTGACAACCCTTTGGATTATTCTCTCCCTCTCTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCTCTTTGGTTTTCCTCTTAAAACCCTTTCGCCAACCTCGAGTCATCTCGGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCGGTATTGGGGAGGAATGCTAAATTTGCCAACACTGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAACGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTGGAAATGGATCTCTCAGTGATTCGTCGAACTGGGAAGAAGGCAATGACAATAGCTATAGCAGGAATGATTCTTCCATTCGGAATCGGAGCTGCTTTTTCATTCCAGTTTCACAAAGCAGATGATAAACTGAGCTACAACACTTACATTATGTTTCTTGGTATCGCGCTTTCGGTGACTGCTTTCCCAGTGCTAGCTAGGATTCTTGCAGAGCTTAAACTGATAAACTCAGAGCTTGGAAGGATGGCTATGGCTTCTGCTCTTTTCAATGACATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCTGAGAATGATTCCTCATCTTTGGCTTCTTTATGGGTTGTACTGTCAAGTGCAGGCTTTGTTTTGTTTTGCATCTTTGTCATTAGACCGATGATCGCGTGGATGATTCGAAAAACCCCGGAAGGAGAAAGTTTCAGTGAGTTCTACATATGTTTGATCCTCACAGGGGTTATGATCTCAGGGTTTATTACAGATGCCATTGGAACACACTCGGTTTTTGGGGCTTTTGTGTTTGGGTTGGTTATCCCAAATGGGTCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTTTGCTCCCTCTCTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGGATAGCATAGATGGATTGACCACTTGGATAGCTATTATATTCATCACAATCCTTTCTTTTATTGGCAAAATCATTGGAACTCTCCTTGCCGCCATTTGTTATCAGATGTCCTATCGCGAAGGCGTCACATTAGGCTTGCTTATGAACACCAAAGGCCTTATTGAAATGATCATCCTCAACGTTGGAAAGGACCAAAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCCCTGGTTATGACGGGGATAATAACACCTGTAGTTACCATAATCTATAAGCCAACTAGAAGGTTTCTACCCTATAAGAAAAGAACAGTTCAAGCATCGAAACCAGATTCAGAGTTCAGAATATTAGTTTGCATCCACACACCTCGAAATGTGCCAACAATCATCAACCTCCTTGATGCATCCCACCCAACCAAAAGATCCCCAATCTGCGTTTATGTGCTACACTTGGTCGAACTCACAGGCCGAGCCTCCGCCATGCTCATTGTCCACAACACTCGAAAATCAGGTCGCCCAGCACTGAATCGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAACAACATGTCGAATGCGTCTCTGTGCAGCCCCTCACAGCCATTTCCCCCTACTCGACAATGCACGAAGACATCTGCAATTTAGCCGAGGACAAACGCGTCGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTGGATGGAGGAATGGAAGCTGCAAATCCAGCATTTAGATTGGTTAACCAAAACGTGTTAGCCAATGCCCCTTGCTCCGTCGGAATCCTAGTGGATCGAGGCCTAAGCGGCTCGAATCGAGCCACGTCGAACAAAGCATCTCATTATAACATAATCGTGCTGTTCTTCGGCGGACAAGACGACAGAGAAGCTCTATCATACGCATGGAGAATGTCAGATCATCCAGGAGTAAGCTTAACAATAATGCGATTCATAGCCGGAGGAGAAGCAGCAGAACCAAAACCAGAAGCAAACGCAAACGAAGAAGGAATTTCAGCAATGGAAATAGAAATTGACAGAGAGAGGAAACTGGACGAAGAATACATACAAGAATTCAGGTCAAAGAATGTAAATGCAGAGTCGATTACTTACACGGAGAAAGTATTGAACAACGGTGAGGAGACAGTGGCGGCGATAAGATCAATGGACGATGCTCACGACTTGTTCATCGTGGGAAGAGGAGAAGCTCAGCTATCACCACTCACCGCCGGAATGACAGACTGGAGTGAATGTCCAGAGCTGGGAGCAATCGGAGATTTGTTAGCTTCGTCGGATTTTGCAGCGACGGCGTCAGTTTTAGTAGTGCAACAGTTCGGAGCAGCGGCGGATCATGAGGATGAAGAAGAAGAAGAAGAAGAAGATTCACCACATAATCAAGATCCAGGGGAGCAATTCCAAGGATTGAGATCAGTGAATTTGAGGCAACATCCTCCGTCAAGAGTTGATATTATGTACAATACTGTCAATACATGA 2532 44.55 MDVEASKNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRSLVFLLKPFRQPRVISEILGGVILGPSVLGRNAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMTIAIAGMILPFGIGAAFSFQFHKADDKLSYNTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSAGFVLFCIFVIRPMIAWMIRKTPEGESFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVDSIDGLTTWIAIIFITILSFIGKIIGTLLAAICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALVMTGIITPVVTIIYKPTRRFLPYKKRTVQASKPDSEFRILVCIHTPRNVPTIINLLDASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVECVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEAANPAFRLVNQNVLANAPCSVGILVDRGLSGSNRATSNKASHYNIIVLFFGGQDDREALSYAWRMSDHPGVSLTIMRFIAGGEAAEPKPEANANEEGISAMEIEIDRERKLDEEYIQEFRSKNVNAESITYTEKVLNNGEETVAAIRSMDDAHDLFIVGRGEAQLSPLTAGMTDWSECPELGAIGDLLASSDFAATASVLVVQQFGAAADHEDEEEEEEEDSPHNQDPGEQFQGLRSVNLRQHPPSRVDIMYNTVNT 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13197270 13200185 + Hsped.08g12410.1 Hepe08g1241 577213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1241 843 FunFam Cation/H(+) antiporter 15 40 440 - -
Hepe08g1241 843 Gene3D - 477 765 - -
Hepe08g1241 843 Gene3D - 40 438 IPR038770 -
Hepe08g1241 843 PANTHER CATION/H + ANTIPORTER 16 796 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Hepe08g1241 843 Pfam Sodium/hydrogen exchanger family 55 430 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Hepe08g1241 843 MobiDBLite consensus disorder prediction 793 843 - -
Hepe08g1241 843 MobiDBLite consensus disorder prediction 796 810 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1241 K26731 - - csv:101219265 1436.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0670 Hepe-Chr1:68919654 Hepe08g1241 Hepe-Chr8:13197270 1.45e-160 dispersed
Hepe03g1756 Hepe-Chr3:74440533 Hepe08g1241 Hepe-Chr8:13197270 2.05e-110 dispersed
Hepe06g0185 Hepe-Chr6:6656738 Hepe08g1241 Hepe-Chr8:13197270 6.63e-155 dispersed
Hepe06g0355 Hepe-Chr6:13270896 Hepe08g1241 Hepe-Chr8:13197270 2.64e-227 dispersed
Hepe06g0356 Hepe-Chr6:13354918 Hepe08g1241 Hepe-Chr8:13197270 1.62e-231 dispersed
Hepe06g1732 Hepe-Chr6:68388335 Hepe08g1241 Hepe-Chr8:13197270 6.14e-111 dispersed
Hepe07g0093 Hepe-Chr7:868686 Hepe08g1241 Hepe-Chr8:13197270 6.97e-98 dispersed
Hepe07g0094 Hepe-Chr7:888532 Hepe08g1241 Hepe-Chr8:13197270 2.90e-123 dispersed
Hepe07g0782 Hepe-Chr7:9508398 Hepe08g1241 Hepe-Chr8:13197270 1.07e-250 dispersed
Hepe07g0783 Hepe-Chr7:9531134 Hepe08g1241 Hepe-Chr8:13197270 9.15e-181 dispersed
Hepe08g1241 Hepe-Chr8:13197270 Hepe10g1365 Hepe-Chr10:49907047 4.01e-144 dispersed
Hepe08g1241 Hepe-Chr8:13197270 Hepe04g0258 Hepe-Chr4:45783203 1.47e-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1241 . 10 791 Antiporter Super Family AT2G13620 73.9 0.0e+00 1166.0
Hepe04g0870 . 75 803 Antiporter Super Family AT3G53720 68.3 7.8e-278 953.4
Hepe07g0782 . 83 780 Antiporter Super Family AT3G53720 50.4 2.0e-185 646.4
Hepe07g0782 . 1 797 Antiporter Super Family AT5G41610 68.9 1.5e-308 1055.4
Hepe07g0783 . 1 645 Antiporter Super Family AT5G41610 67.5 4.4e-247 851.3
Hepe04g0870 . 8 815 Antiporter Super Family AT5G41610 51.2 1.0e-211 733.8
Hepe07g0782 . 9 796 Antiporter Super Family AT4G23700 62.5 1.8e-280 962.2
Hepe07g0783 . 1 644 Antiporter Super Family AT4G23700 66.0 4.9e-238 821.2
Hepe07g0782 . 4 779 Antiporter Super Family AT3G17630 64.4 3.1e-277 951.4
Hepe07g0783 . 3 644 Antiporter Super Family AT3G17630 63.1 4.1e-221 765.0
Hepe04g0870 . 2 812 Antiporter Super Family AT3G17630 51.3 6.7e-208 721.1
Hepe07g0782 . 5 784 Antiporter Super Family AT1G64170 56.5 5.0e-235 811.2
Hepe07g0783 . 2 644 Antiporter Super Family AT1G64170 55.1 6.2e-185 644.8
Hepe08g1241 . 10 791 Antiporter Super Family AT2G13620 73.9 0.0e+00 1166.0
Hepe07g0782 . 5 784 Antiporter Super Family AT1G64170 56.5 5.0e-235 811.2
Hepe07g0783 . 2 644 Antiporter Super Family AT1G64170 55.1 6.2e-185 644.8
Hepe07g0782 . 9 796 Antiporter Super Family AT4G23700 62.5 1.8e-280 962.2
Hepe07g0783 . 1 644 Antiporter Super Family AT4G23700 66.0 4.9e-238 821.2
Hepe07g0782 . 1 797 Antiporter Super Family AT5G41610 68.9 1.5e-308 1055.4
Hepe07g0783 . 1 645 Antiporter Super Family AT5G41610 67.5 4.4e-247 851.3
Hepe04g0870 . 8 815 Antiporter Super Family AT5G41610 51.2 1.0e-211 733.8
Hepe07g0782 . 4 779 Antiporter Super Family AT3G17630 64.4 3.1e-277 951.4
Hepe07g0783 . 3 644 Antiporter Super Family AT3G17630 63.1 4.1e-221 765.0
Hepe04g0870 . 2 812 Antiporter Super Family AT3G17630 51.3 6.7e-208 721.1
Hepe04g0870 . 75 803 Antiporter Super Family AT3G53720 68.3 7.8e-278 953.4
Hepe07g0782 . 83 780 Antiporter Super Family AT3G53720 50.4 2.0e-185 646.4
Hepe03g1756 . 47 790 Antiporter Super Family AT3G52080 55.2 2.0e-236 815.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39