Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1246 ATGTCTCATAGCACTTCTCGTTTCTCCTTCATTCTCAGAAACTGTGCTCAGCTTTCTGCAATTACCCAAGCAAAGCAAGCCCACGCTCACATCATCATCCATGGCTTCCTTCCACATACAACTCTTCAAACAGATCTCCTGTTGGTGCATTGCAAATGTGGGTTTCTGCAAGACGCCCGCAAACTGTTCGACAGAATGCGTCACAGAAACATGCACTCTTGGAATATCTTGATTGCTTCTTATGTTCATAGTTCTTTGCACTCTGATGCAATAAGTATTTTTAATGAGTTTAGGAACCTTGGTTTTCTGCCTGACCATTATACTTTGCCCCAGATGTTTAAGGCTAGTGTTGTTCCAAGCGTTTTGAATGCTTGTGGAGGGGAAGGAGATTTGAGAAAAGGTAAAGAGATTCATTGCTTGGTTTTGAAGAGTGTGGGATTTGCTGCTGATGTTGCAATTGGGAACTCATTGATTGATATGTATTCCAAGTGTGGAAGCCTGCTTGATTCTGAAAAGTTCTTTTGGAATATGAGTAGCTTGAATATTGTTACATGGACCACAATGATATCTTGTTATGGGGCTCATGGGGAAGGAGAGAAATCTTTGGTCCTGTTTAACAAAATGAAAGATTGTGGAATCCAACCCAATTCTGTCACATTGACTGCCATTTTGGCTAGCTGCAGCCATTCAGGTTACATCAATGAAGGTTGGAGAATTTTCAAGTCTATTGTTTCAGATTACGGATTCGAACCGAGTGTGGAACATTATGCTTGTGTTGTTGATCTTCTGAGTCGGTTCGGCTTTCTGCAGGAAGCGTTTTTGTTGATAAGAAATATGAAGCCAACTGCTGCTGCAAGCGTCTGGGGTGCTCTGCTTTCTGGTTGTATGATGCACAGGAACCTTGAGATTGGAGAAATTGCAGCTAACCGGCTTTTCGAGTTGGAACCTACGAATCCAAGCAATTTTATAGCTTTGATTAGTATATATGAATCTCTTGGTATATCGCACGGCGTTTTGCTGACAAGAGCGAAAATGAGAAACCTGGGTTTGGCAAAACTCCCTGGCTGCAGCTGGATAACCATTGATGGAGTTGTACATAAATTTTACAGAGGGGGCAATTCTCAACCTGTGGCTTTGAGAATTTTTGAAACATTAAGACAAGCGACTTACAAGTTGGATTCAATTGAATCCAAGGTACACATTTCAGTCTTCTTGTTAGATGCAGCTGGAGTTCAAGTCCAGATTGTGATTTTGCAGTCGTTAATCTCACTACTCGAAAAGATTCTGTTTCTCTTAAAGAAGTTCGATATTTGTTACAGAGCCAAGAAAGGGGACTGGAATGATTCGACTATAGTATCTTGGATATCACCAATTGCTCTAGAGATGTTATACAGTCAGGTCAACGAAATGAATTCTAACTTCCGGGGGATCGAGAAAAACATGACCGTCCTGTCAATTCTTTCGGAAGACTGTTGTTTGCAACTGGACCATGGTTTTAGACCTCATTTTCAGTAA 1515 41.19 MSHSTSRFSFILRNCAQLSAITQAKQAHAHIIIHGFLPHTTLQTDLLLVHCKCGFLQDARKLFDRMRHRNMHSWNILIASYVHSSLHSDAISIFNEFRNLGFLPDHYTLPQMFKASVVPSVLNACGGEGDLRKGKEIHCLVLKSVGFAADVAIGNSLIDMYSKCGSLLDSEKFFWNMSSLNIVTWTTMISCYGAHGEGEKSLVLFNKMKDCGIQPNSVTLTAILASCSHSGYINEGWRIFKSIVSDYGFEPSVEHYACVVDLLSRFGFLQEAFLLIRNMKPTAAASVWGALLSGCMMHRNLEIGEIAANRLFELEPTNPSNFIALISIYESLGISHGVLLTRAKMRNLGLAKLPGCSWITIDGVVHKFYRGGNSQPVALRIFETLRQATYKLDSIESKVHISVFLLDAAGVQVQIVILQSLISLLEKILFLLKKFDICYRAKKGDWNDSTIVSWISPIALEMLYSQVNEMNSNFRGIEKNMTVLSILSEDCCLQLDHGFRPHFQ 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13274600 13276840 + Hsped.08g12460.1 Hepe08g1246 577218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1246 504 NCBIfam pentatricopeptide repeat 72 105 IPR002885 -
Hepe08g1246 504 NCBIfam pentatricopeptide repeat 183 216 IPR002885 -
Hepe08g1246 504 FunFam Small kernel1 155 378 - -
Hepe08g1246 504 Gene3D Tetratricopeptide repeat domain 232 357 IPR011990 GO:0005515(InterPro)
Hepe08g1246 504 Gene3D Tetratricopeptide repeat domain 2 114 IPR011990 GO:0005515(InterPro)
Hepe08g1246 504 Gene3D Tetratricopeptide repeat domain 115 231 IPR011990 GO:0005515(InterPro)
Hepe08g1246 504 Pfam PPR repeat family 181 228 IPR002885 -
Hepe08g1246 504 PANTHER OS07G0578800 PROTEIN-RELATED 8 376 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Hepe08g1246 504 Pfam E motif 298 359 IPR046848 -
Hepe08g1246 504 Pfam PPR repeat 48 70 IPR002885 -
Hepe08g1246 504 Pfam PPR repeat 73 102 IPR002885 -
Hepe08g1246 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Hepe08g1246 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 251 IPR002885 -
Hepe08g1246 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1246 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1246 Hepe-Chr8:13274600 Hepe09g1669 Hepe-Chr9:50092711 4.55e-79 dispersed
Hepe08g1246 Hepe-Chr8:13274600 Hepe02g1656 Hepe-Chr2:22418981 8.62e-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1282 . . . . . . . . . Cmo20g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g01065 . . . . Bhi10g01667 . . . Hepe08g1246 . . Cla02g00059 . . . . . . Lsi10g00721 . . Cme11g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014206 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 0 1 1 1 23