Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1248 ATGACTTTTCCACTTCAAACTAAACCCAAAAAACCCACCATTATCTTTATTTCAATGGCTTCCCTTCTCTTCCTCTCTCTCTTGGCTCTCTTCCTCACTCTACATCTCTCCTCCGCCTCCCACCACCCAGAAATCGCCGCCGCCTGCAGGGCCACTCGCTTCCCGGACCAATGCGGATCTTCCATTTCCGAATCCAACCGCCTCCCCAAAAATCAAAATCCCACGCCGCTGCAGATAATCCAGGCCGCCGTCTGGGTCTCGTCGGAGAATCTCAAAACCGCCAAATCCATGGTGAAGGGCATCCTCGATTCGTCGGCGGAGAGCCTCAACCGCAGCGCCGCGGCGCTGAGCTGTCTGGATGCGGTGGGTTACTCGGAGTACCGAATTTCGCTTACGAACGACGCCATTCCGGTCGGACGGATTAAAGACGTGCGCGCGTGGCTGAGTGCGTCGCTTCTCTACCAGACCGGTTGCCGGGGAGGGCTCAAGTACGTGAACGACACGCGCGAGGTGGATGAAACGATGTCGTTTCTCGACTACTTGACCGTGCTGTCGAGCAACGCGCTAAGCATGGCGGTGGCGTACGATATCTTCGGGAATGATACGGGAACGTGGGGCCCGCCGAGGACGGAGCGGGATGGGTACTGGGAGCCGGAGAGGACTGGGTCGTCGGTCGGGTCGGGTTTTGAGTTTCCGGTAAAGACGGTGGCGGACGCGACGGTGTGCAAGGACGGGAGTGATGGGTGTTTCAGGACGGTTCAGGCGGCGGTGGATGCGGCAGCGGCGAACGCGTCGGCGAGATTTGTGATACATATAAAGGAAGGGGTTTACGAGGAGATTGTGAGAGTGGCAATGGAGAAGAAAAATTTGGTGTTTTTGGGAGATGGTATGGGCAAAACCGTAATAACGGGCTCCTTAAATGTGGGCCAGCCTGGAATTTCCACCTTTAATTCCGCCACAGTCGGAGTACTTGGCGATGGATTCATGGCTAGTGGCCTCACCATTCAAAACACAGCAGGCCCTGATGCCCACCAAGCTGTGGCCTTTAGATCAGACAGCGATCTCTCCATCATTCATAACTGTGAGTTTATAGGTAACCAAGACACTCTCTACGTCCACTCCCTTCGCCAATTCTACAACTCTTGTCGAATCCTAGGCAATGTGGATTTCATTTTTGGCAACTCAGCCTCCATCTTCCAACATTGCCAAATCTTCGTCCGTCCTCGCCAACTTGACCCCCGGGCCGGAGACGACAATGCCATAACGGCGCACGGTAGGACCGACCCTGCCCAGTCGACAGGGTTCGTGTTCGAAAATTGCCTCATAAATGGCACCGAGGAGTTCATGTCGTTGTACTATGCCAATCCTCGGGATCATAGAACCTTCTTGGGGCGGCCGTGGAAGGAGTATTCGAGGACGGTTTTTATACGGTGTGATTTTGAAGCTCTTGTTTCTCCTTCTGGGTGGATGCCATGGATTGGGGATATTGGTTTGAAGACTTTGTATTATGGAGAGTTTGAAAATTTTGGAATTGGTTCGAAGTTGTCGGAGAGAGTCGAGTGGAGTAGTCAAATCCCTACCGAGTATGTTGCTAGTTACTCTATTGAGAATTTCATTCAAGGTAACGAATGGATTCCATCATCTTAG 1647 52.94 MTFPLQTKPKKPTIIFISMASLLFLSLLALFLTLHLSSASHHPEIAAACRATRFPDQCGSSISESNRLPKNQNPTPLQIIQAAVWVSSENLKTAKSMVKGILDSSAESLNRSAAALSCLDAVGYSEYRISLTNDAIPVGRIKDVRAWLSASLLYQTGCRGGLKYVNDTREVDETMSFLDYLTVLSSNALSMAVAYDIFGNDTGTWGPPRTERDGYWEPERTGSSVGSGFEFPVKTVADATVCKDGSDGCFRTVQAAVDAAAANASARFVIHIKEGVYEEIVRVAMEKKNLVFLGDGMGKTVITGSLNVGQPGISTFNSATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIHNCEFIGNQDTLYVHSLRQFYNSCRILGNVDFIFGNSASIFQHCQIFVRPRQLDPRAGDDNAITAHGRTDPAQSTGFVFENCLINGTEEFMSLYYANPRDHRTFLGRPWKEYSRTVFIRCDFEALVSPSGWMPWIGDIGLKTLYYGEFENFGIGSKLSERVEWSSQIPTEYVASYSIENFIQGNEWIPSS 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13291241 13295510 + Hsped.08g12480.1 Hepe08g1248 577220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1248 548 NCBIfam pectinesterase inhibitor domain 21 188 IPR006501 GO:0004857(InterPro)
Hepe08g1248 548 Pfam Pectinesterase 238 542 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe08g1248 548 SMART PMEI_2 40 191 IPR006501 GO:0004857(InterPro)
Hepe08g1248 548 CDD PMEI-like_3 47 191 - -
Hepe08g1248 548 FunFam Probable pectinesterase/pectinesterase inhibitor 51 43 194 - -
Hepe08g1248 548 Pfam Plant invertase/pectin methylesterase inhibitor 45 191 IPR006501 GO:0004857(InterPro)
Hepe08g1248 548 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 191 IPR035513 -
Hepe08g1248 548 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 194 IPR035513 -
Hepe08g1248 548 Gene3D - 235 548 IPR012334 -
Hepe08g1248 548 PANTHER PECTINESTERASE 17 547 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe08g1248 548 SUPERFAMILY Pectin lyase-like 238 547 IPR011050 -
Hepe08g1248 548 FunFam Pectinesterase 4 235 548 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1248 Hepe-Chr8:13291241 Hepe09g1678 Hepe-Chr9:50373634 3.71e-89 dispersed
Hepe08g1248 Hepe-Chr8:13291241 Hepe08g1249 Hepe-Chr8:13299434 7.84e-274 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1248 - - - 0.0