Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1249 ATGCTCACTCTCCCCAGAAAACACCACCAATTCCCCATTTCTAAATCCACCTTCCTTTTCCTCTCCATGGCTTCCCTCTCCTTCCTCTCCTTCCTCTCCCTCTTCTTCTTCCTCTCTCTTTCCTCCTCCTCCGCCTCCCGCCACCGCTCCCACCACCACCACCTCCCTCCCCATTTGATCTCCACCTCCACCTCTACCATTCTCCGCGCCTGCAACGCCACCCGTTTCCCCGACCAATGCGGATCTTCCCTCTCCAAATCCCCCTCTCTCCCCCCCAATCCCACTCCTCTCCAGATCATCCAATCCGCCGTCGGACTCTCCTCCGACGCTCTTTCCACCGCGCAGTCCATGGTCAGAGATATTCTCGACTCCTCGGCTACGAATCCCAATCGGACCACCGCCGCCAAGAATTGCCTCGAGGTCCTGGGGAACTCCGAGTACCGAATTTCTCAGACCAACGACGCTCTCCGCCGTGGTCGGACTAAGGACGCGCGCGCGTGGATGAGCGCCTCCCTGCTTTTCCATTACGATTGCTGGTCTTCCCTCAAATACGCCAACGACACCCAGTTGGTGGATAAAACGATGGCGTTTCTCGACTCTCTCATCGGCCTCTCCAGCAACGCGCTGAGTATGGTCGCGGCTTACGACGTCTCCGGAAACGACACGGCGGCGTGGACACCGCCGAAGACCGAGCGCGATGGGTTCTGGGAGGGCAGTAGCGGCGGATCTGGAATGGGGTTCAGCGGCGGGTTCCCGTCGAAGCTGACAGCCGACGCGACGGTCTGCAAGGACGGCGCCGGTGGATGTTACAAAACCGTTCAGGAAGCCGTGAATGCCGCGCCGGAAAATGCGGCGGCGGCGCGTAGGTTTGTGATTCACATTAAGGAAGGTGTTTACGAAGAAACCGTGAGGGTTCCGTTAGAGAAGAAGAATGTGGTGTTTTTGGGAGATGGTATGGGCAAAACCGTAATTACGGGCTCACTCAATGTGGGCCAGCCTGGGATTTCCACTTACAACACGGCTACCGTTGGAGTACTTGGTGATGGATTCATGGCTAGTGGTCTCACTATTCAAAACACAGCAGGCCCTGATGCCCATCAAGCTGTGGCCTTTAGATCAGACAGTGATCTCTCAGTCATTCAAGACTGTGAGTTTCTAGGCAACCAAGATACTCTCTACGCTCACTCCCTCCGCCAGTTCTACAAATCCTGTAAGATACAAGGCAATGTAGATTTCATCTTTGGAAACTCTGCTTCCATCTTCCAAGACTGCGAGATCCTAGTCCGTCCCCGACAACTCAAGCCCGAGAAAGGCGAAAACAACGCCATTACTGCTCATGGCAGGACCGACCCTGCTCAATCGACCGGTTTCGTGTTCCAGAATTGCCTGATAAATGGCACTGAGGAGTACATGTCATTGTACTACAGCAAGCCTAAAGCGCACAAGAACTACTTGGGGAGGCCGTGGAAGGAGTACTCGAGGACGGTTTTCATACATTGTAATCTGGAGGGTCTTGTTTCGGGCCCCGGGTGGATGCCGTGGAGCGGGGATTTTGCGTTGAAGACTCTCTTCTATGGGGAGTTTGAGAATTCCGGGGCGGGGTCGAAGTTGTCGGAGAGAGTCGGGTGGAGTAGCCAGATACCAGCACAGCATGTTTTTAGTTACTCTGTTGAGAATTTCATTCAGGGAGATGAATGGATTCCTTCATCTCAGTCATCTGCTAAACCAAAAATGTTGAACAGAAAAACTAAAAATGTGAAATTAGATTAG 1770 53.79 MLTLPRKHHQFPISKSTFLFLSMASLSFLSFLSLFFFLSLSSSSASRHRSHHHHLPPHLISTSTSTILRACNATRFPDQCGSSLSKSPSLPPNPTPLQIIQSAVGLSSDALSTAQSMVRDILDSSATNPNRTTAAKNCLEVLGNSEYRISQTNDALRRGRTKDARAWMSASLLFHYDCWSSLKYANDTQLVDKTMAFLDSLIGLSSNALSMVAAYDVSGNDTAAWTPPKTERDGFWEGSSGGSGMGFSGGFPSKLTADATVCKDGAGGCYKTVQEAVNAAPENAAAARRFVIHIKEGVYEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFLGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASIFQDCEILVRPRQLKPEKGENNAITAHGRTDPAQSTGFVFQNCLINGTEEYMSLYYSKPKAHKNYLGRPWKEYSRTVFIHCNLEGLVSGPGWMPWSGDFALKTLFYGEFENSGAGSKLSERVGWSSQIPAQHVFSYSVENFIQGDEWIPSSQSSAKPKMLNRKTKNVKLD 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13299434 13301969 + Hsped.08g12490.1 Hepe08g1249 577221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1249 589 Gene3D - 252 577 IPR012334 -
Hepe08g1249 589 FunFam Probable pectinesterase/pectinesterase inhibitor 51 65 214 - -
Hepe08g1249 589 NCBIfam pectinesterase inhibitor domain 30 212 IPR006501 GO:0004857(InterPro)
Hepe08g1249 589 PANTHER PECTINESTERASE 28 569 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe08g1249 589 Pfam Pectinesterase 258 564 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe08g1249 589 SMART PMEI_2 62 211 IPR006501 GO:0004857(InterPro)
Hepe08g1249 589 FunFam Pectinesterase 252 578 - -
Hepe08g1249 589 SUPERFAMILY Pectin lyase-like 256 569 IPR011050 -
Hepe08g1249 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 215 IPR035513 -
Hepe08g1249 589 CDD PMEI-like_3 70 216 - -
Hepe08g1249 589 MobiDBLite consensus disorder prediction 568 589 - -
Hepe08g1249 589 Pfam Plant invertase/pectin methylesterase inhibitor 67 211 IPR006501 GO:0004857(InterPro)
Hepe08g1249 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 213 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1249 Hepe-Chr8:13299434 HepeContig65g0050 Hepe-ChrContig65:4828376 2.29e-91 dispersed
Hepe08g1248 Hepe-Chr8:13291241 Hepe08g1249 Hepe-Chr8:13299434 7.84e-274 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1249 - - - 0.0