Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1258 ATGGCCGATGCTGAGGATATCCAGCCACTTGTTTGCGATAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCACCCAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCCCGACATACTGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTATGTTGGAGATGAAGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAAATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAGACTTTTAATGTACCTGCCATGTATGTTGCTATCCAGGCTGTTCTATCTCTGTACGCCAGTGGTCGTACAACAGGTATTGTGCTCGATTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGCTGGACGTGATCTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAACTTGCTTATGTAGCACTCGACTATGAGCAGGAACTTGAGACTTCTAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCTGATGGACAAGTCATCACAATCGGAGCGGAGAGATTCCGTTGCCCCGAGGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATTATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGTAACATTGTTCTCAGTGGTGGTTCGACCATGTTCCCTGGTATTGCTGACCGAATGAGCAAAGAGATCACAGCTCTTGCTCCCAGCAGCATGAAAATTAAGGTCGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCCATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGCGAGTATGACGAATCTGGCCCATCCATCGTCCACAGGAAGTGCTTCTAA 1134 46.65 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETSKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13509601 13512729 + Hsped.08g12580.1 Hepe08g1258 577230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1258 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Hepe08g1258 377 PRINTS Actin signature 51 62 IPR004000 -
Hepe08g1258 377 PRINTS Actin signature 63 85 IPR004000 -
Hepe08g1258 377 PRINTS Actin signature 142 161 IPR004000 -
Hepe08g1258 377 PRINTS Actin signature 28 37 IPR004000 -
Hepe08g1258 377 PRINTS Actin signature 117 130 IPR004000 -
Hepe08g1258 377 PRINTS Actin signature 238 254 IPR004000 -
Hepe08g1258 377 FunFam Actin, alpha skeletal muscle 3 179 - -
Hepe08g1258 377 Pfam Actin 5 377 IPR004000 -
Hepe08g1258 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Hepe08g1258 377 Gene3D - 10 371 - -
Hepe08g1258 377 SMART actin_3 7 377 IPR004000 -
Hepe08g1258 377 Gene3D - 140 340 - -
Hepe08g1258 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Hepe08g1258 377 FunFam Major actin 260 340 - -
Hepe08g1258 377 FunFam Putative actin-related protein 5 341 369 - -
Hepe08g1258 377 FunFam Actin, muscle 182 273 - -
Hepe08g1258 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Hepe08g1258 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Hepe08g1258 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Hepe08g1258 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Hepe08g1258 377 PANTHER ACTIN 8 369 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0855 Hepe-Chr4:62818130 Hepe08g1258 Hepe-Chr8:13509601 1.41e-270 dispersed
Hepe04g1131 Hepe-Chr4:66368545 Hepe08g1258 Hepe-Chr8:13509601 8.30e-279 dispersed
Hepe05g0523 Hepe-Chr5:7215796 Hepe08g1258 Hepe-Chr8:13509601 4.68e-134 dispersed
Hepe06g0319 Hepe-Chr6:11316899 Hepe08g1258 Hepe-Chr8:13509601 4.81e-66 dispersed
Hepe06g0523 Hepe-Chr6:30255387 Hepe08g1258 Hepe-Chr8:13509601 7.66e-35 dispersed
Hepe08g1258 Hepe-Chr8:13509601 Hepe09g1698 Hepe-Chr9:51555315 8.44e-88 dispersed
Hepe08g1258 Hepe-Chr8:13509601 Hepe01g0302 Hepe-Chr1:45277193 2.80e-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1258 K10355 - csv:101215469 756.903