Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1260 ATGCTGGAAATTCCACCTTCACCGGATAACTCTACTGCCGCCGCCGAGGACGACGGTGCGGCGGCCTCCGCCGGACTTGCGGAGGAAGCTGACCGGAGCTGGGCTGGTAACCGGTGGCCACGAGAAGAGACCATCGCTTTGCTTAAGGTGAGGTCGAGTATGGACACTGCGTTTAGAGATGCGAGTCTTAAAGCTCCTCTATGGGAAGAAGTTTCCAGGAAATTGGCTGAGCTTGGGTATAATCGAAATGCGAAAAAATGCAAAGAGAAGTTTGAGAACATTTATAAGTATCACAAAAGGACTAAAGATGGCAGATCAGGCAAATCGAATGGGAAAAATTATAGGTATTTTGAGCAATTAGAAGCTTTAGATAATCATCCATTGCAACCTTCTCAAGCTGATTCAATGGAAGAAATCCCAAGGATTATCCCAAACAATATCGTTCACAATGCAATTCCATGTTCCGTAGTAACCCCGGGTTCAAATTTTGTTGAAACTACCACCACATCGATGTCCACTTCGACGACGTCTTGCTCGAGCAAAGAGTCGGGTGGGACGAGGAAGAAGAAGAGGAAGCTTGTGGAGTTCTTTGAGAGGTTAATGAATGAGGTGGTTGAGAAGCAGGAGAAATTGCAACAGAAGTTTGTGGAGGCATTGGAGAAATGTGAACAAGACAGATTAGCTAGAGAAGAAGAATGGAAGATGCAAGAATTAGCTCGAATCAAGAAAGAGCGAGAGCGTTTAAATCAAGAGAGATCGATCGCTGCTGCAAAGGATGCGGCTGTGCTTTCATTCTTGAAGATGTTCTCTGATCAGGTAGGCACGGTGCAGTTTCCCGAGAGCTCGATTTTGATGGAGAATTTAATGGACAAGCAAGATGATGGTAATGTTGACAGAACTACAAGCAATCAAGAGAATAGCAACAATGGAAATTCGAATCAGATTAGCTCGTCTCGGTGGCCGAAAGAAGAGATCGATGCTCTGATTCAGCTTAGGACTAATCTGCAGATGAAGTACCAAGAAAATGGCCCTAAAGGTCCTCTCTGGGAGGAAATATCATTGGCCATGAAGAAACTTGGGTATGATAGAAGTTCAAAGAGGTGTAAAGAGAAATGGGAGAACATCAACAAATACTTCAAAAGAGTAAGGGAAAGCAACAAAAAGCGACCCGATGATTCGAAGACATGCCCTTATTTCCAGCAGCTCGACGCATTGTACAAACTGAAATCCAAGAAAGTCGTCGACAATCCCGCTAATCAGAATTACGATCTAAAACCTGAGGAACTATTGATGCACATGATGGGTGGCCAGGAAGAAAGCCACCAACCCGAATCAGCAACAGACGACGGCGAAACTGAGAATGCCAATCAGAATCAAGAAGACGAAGACGAAGACGAGGATGAAGAAGATGAAGATGAAGATTATCAAATTGTAGCCAACAACAACAACAGTAATCAAATGAAAGTAGCTAGCTGA 1476 44.24 MLEIPPSPDNSTAAAEDDGAAASAGLAEEADRSWAGNRWPREETIALLKVRSSMDTAFRDASLKAPLWEEVSRKLAELGYNRNAKKCKEKFENIYKYHKRTKDGRSGKSNGKNYRYFEQLEALDNHPLQPSQADSMEEIPRIIPNNIVHNAIPCSVVTPGSNFVETTTTSMSTSTTSCSSKESGGTRKKKRKLVEFFERLMNEVVEKQEKLQQKFVEALEKCEQDRLAREEEWKMQELARIKKERERLNQERSIAAAKDAAVLSFLKMFSDQVGTVQFPESSILMENLMDKQDDGNVDRTTSNQENSNNGNSNQISSSRWPKEEIDALIQLRTNLQMKYQENGPKGPLWEEISLAMKKLGYDRSSKRCKEKWENINKYFKRVRESNKKRPDDSKTCPYFQQLDALYKLKSKKVVDNPANQNYDLKPEELLMHMMGGQEESHQPESATDDGETENANQNQEDEDEDEDEEDEDEDYQIVANNNNSNQMKVAS 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13552772 13554457 + Hsped.08g12600.1 Hepe08g1260 577232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1260 491 Coils Coil 194 221 - -
Hepe08g1260 491 MobiDBLite consensus disorder prediction 436 491 - -
Hepe08g1260 491 MobiDBLite consensus disorder prediction 299 319 - -
Hepe08g1260 491 Pfam Myb/SANT-like DNA-binding domain 37 123 IPR044822 -
Hepe08g1260 491 Pfam Myb/SANT-like DNA-binding domain 318 405 IPR044822 -
Hepe08g1260 491 FunFam Trihelix transcription factor GT-2 320 381 - -
Hepe08g1260 491 MobiDBLite consensus disorder prediction 454 476 - -
Hepe08g1260 491 FunFam Trihelix transcription factor GT-2 39 100 - -
Hepe08g1260 491 CDD GT1 318 383 - -
Hepe08g1260 491 Gene3D - 320 381 - -
Hepe08g1260 491 Gene3D - 39 100 - -
Hepe08g1260 491 ProSiteProfiles Myb-like domain profile. 37 95 IPR001005 -
Hepe08g1260 491 SMART sant 35 97 IPR001005 -
Hepe08g1260 491 SMART sant 316 378 IPR001005 -
Hepe08g1260 491 MobiDBLite consensus disorder prediction 1 37 - -
Hepe08g1260 491 MobiDBLite consensus disorder prediction 292 319 - -
Hepe08g1260 491 MobiDBLite consensus disorder prediction 477 491 - -
Hepe08g1260 491 PANTHER FI21293P1 27 460 - -
Hepe08g1260 491 Coils Coil 231 258 - -
Hepe08g1260 491 CDD GT1 37 102 - -
Hepe08g1260 491 ProSiteProfiles Myb-like domain profile. 312 376 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1260 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1260 Hepe-Chr8:13552772 Hepe10g1966 Hepe-Chr10:56627531 4.24e-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56201 PF13837 Myb_DNA-bind_4 1.40E-21 CL0123 Hepe TF