Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1290 ATGGATGTTGACCATGATGTAAAGTCGAGGGATCAGATGGATAATATTCTGACGATGATTCAGCAGATGGGAAAATTTCCAGAGTTTTTCGAATTTACTGAATTGCCACCCTCCTCTGCTTTTGCTTTTGCTAGTTCCAATATTGCTGCAGCCACTTCACATCTCATTCAAAACCCAAATTATAATCTCTCACATTCCACCGTTTCAATGAATAACGCCACTACTGACTCTGTTCGACCACCGTGCTTTCCGCCGTACTCCGCCGCTGGCCGGTGGAGAACCCATGTTGCCACCACTGACACGAAACAGAATTCAATGGTGGCAATGAGGGAGATGATCTACAGGATAGCGGCGATGCAGCCGATCCACATAGATCCAGAATCGGTGAAGCCACCAAAACGACGAAACGTGAAGATATCTAAAGATCCACAGAGCGTGGCGGCGCGACATAGAAGAGAGAGAATAAGCGAAAGAATTAGAATACTTCAAAGAATAGTTCCCGGCGGCACCAAAATGGACACGGCCTCCATGTTAGACGAGGCCATTCATTACGTCAAGTTCTTGAAAAACCAAGTCCAATCCCTGGAAAGAGCCGCCGCGTTCAGCTTTCCGGGCGGCGGCGGGAGTAGGCATGGGCAGGTGGAGGATTTTGATTGA 657 48.1 MDVDHDVKSRDQMDNILTMIQQMGKFPEFFEFTELPPSSAFAFASSNIAAATSHLIQNPNYNLSHSTVSMNNATTDSVRPPCFPPYSAAGRWRTHVATTDTKQNSMVAMREMIYRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLERAAAFSFPGGGGSRHGQVEDFD 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14350005 14351639 - Hsped.08g12900.1 Hepe08g1290 577262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1290 218 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 56 200 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1290 218 Pfam Helix-loop-helix DNA-binding domain 148 189 IPR011598 GO:0046983(InterPro)
Hepe08g1290 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 197 IPR036638 GO:0046983(InterPro)
Hepe08g1290 218 SMART finulus 145 194 IPR011598 GO:0046983(InterPro)
Hepe08g1290 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983(InterPro)
Hepe08g1290 218 Gene3D - 138 201 IPR036638 GO:0046983(InterPro)
Hepe08g1290 218 FunFam BHLH transcription factor 142 204 - -
Hepe08g1290 218 Coils Coil 178 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0735 Hepe-Chr4:61261071 Hepe08g1290 Hepe-Chr8:14350005 1.89e-23 dispersed
Hepe06g0280 Hepe-Chr6:10221302 Hepe08g1290 Hepe-Chr8:14350005 5.59e-21 dispersed
Hepe08g1290 Hepe-Chr8:14350005 Hepe08g1329 Hepe-Chr8:15158851 9.76e-16 dispersed
Hepe08g1290 Hepe-Chr8:14350005 Hepe08g1296 Hepe-Chr8:14495901 3.44e-08 proximal
Hepe04g1118 Hepe-Chr4:66094109 Hepe08g1290 Hepe-Chr8:14350005 2.56e-40 transposed
Hepe04g1976 Hepe-Chr4:74607810 Hepe08g1290 Hepe-Chr8:14350005 8.22e-06 transposed
Hepe01g1772 Hepe-Chr1:82828504 Hepe08g1290 Hepe-Chr8:14350005 2.52e-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56203 PF00010 HLH 1.60E-06 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1290 - - - 0.0