Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1295 ATGTCTAGTTATGCCTTCTTGAATGATCAGCTCTCGAGGAGGACCTCCATTTTCGGTTTGCGTTTGTGGGTCGTTTTGGGTATTTGCGTTGGTGCCGCCATTGTTATTGTTCTGTTCCTCATTTCTCTCTGGTTCACTTCCAGGCGCAACAACAATGCCTCTAAATCTAAGTCTTCTCTGAACCCCATTATCCCAAATGTCTCCAAGGAAATCCAGGAAATACGAATCGACCATTCTCGGAACCCAACTCATTCCGACCCTAAACTTCAGTTGGCTTCGAACCCTGAGCCTTTGCCGGAGGCAGAGCCGTTAGCGACGCTGCTTCAGACGGAACAAGAAGGTAGTCCGGCGAGTGGACGCCATAGAATTCACATTGAAATTGGGAAGGACCACCGGATTTCGTACCCGGAGAAAGGCGGCGGTTCGGCCCACGGTAACGGAGAGGCTCGGTCCGGTGATCAGGCGGTGATGGCTGCGCCGGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTTGAGTACTCTACTAATGGTTTTGCGGATGAAAATGTAATTGGTGAGGGCGGATATGGTATTGTGTACCGTGGTGTTCTTGAAGACAACACTGTGGTAGCTGTAAAAAATTTGCTCAATAACAGGGGACAGGCTGAGAAGGAGTTTAAGGTTGAAGTCGAAGCAATTGGACGCGTTCGACACAAGAATCTGGTGCGTTTGCTTGGCTATTGTGCTGAAGGAGCTCATAGGATGCTTGTTTATGAGTACATTGATAATGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGGCCTTGTAGCCCTCTCACATGGGACAGTCGAATGAATATCATTGTTGGAACGGCGAAAGGGTTAACATACCTCCACGAGGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCAAAGGTCTCAGACTTTGGCCTAGCAAAGCTTCTTGGCTCAGAGAGGAGTTATGTAACAACTCGTGTGATGGGAACTTTCGGATATGTAGCTCCAGAATATGCCAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTTGGCATCCTCATTATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCAGGAGAGGTTAATCTAGTTGAGTGGCTTAAAACAATGGTAAGTAATCGAAACGCAGAGGGAGTTCTGGATCCTAAGTTGCCCGAGAAGCCTTCAACAAGAGCGCTTAAGCGTGCTCTGTTAGTAGCTTTACGGTGTGTGGATCCTAATATTCAGAAGAGGCCTAAAATGGGGCATGTAATTCATATGCTTGAAGCTGATGAGTTTCCTTTCCGAGATGATCGTAGGGTGGGACGGGAACCGGGACGATCACTACTAAAGGAAAAACTCATGGAAAGGCTTGTGAGTGAATCTGGAGACAGCAGCGGATATGAAAGTGGAGCGACTCAAGCAAGCCGACATCTATGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCACACACTTTAAGGTGA 1572 47.14 MSSYAFLNDQLSRRTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNNNASKSKSSLNPIIPNVSKEIQEIRIDHSRNPTHSDPKLQLASNPEPLPEAEPLATLLQTEQEGSPASGRHRIHIEIGKDHRISYPEKGGGSAHGNGEARSGDQAVMAAPEVSHLGWGHWYTLRELEYSTNGFADENVIGEGGYGIVYRGVLEDNTVVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYIDNGNLEQWLHGEVGPCSPLTWDSRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNIQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGDSSGYESGATQASRHLWRKQELEEQQPREPHTLR 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14484578 14487976 - Hsped.08g12950.1 Hepe08g1295 577267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1295 523 SMART serkin_6 183 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g1295 523 MobiDBLite consensus disorder prediction 484 523 - -
Hepe08g1295 523 MobiDBLite consensus disorder prediction 129 150 - -
Hepe08g1295 523 Gene3D Transferase(Phosphotransferase) domain 1 259 465 - -
Hepe08g1295 523 Gene3D Phosphorylase Kinase; domain 1 154 258 - -
Hepe08g1295 523 Pfam Protein kinase domain 185 451 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g1295 523 MobiDBLite consensus disorder prediction 505 523 - -
Hepe08g1295 523 ProSitePatterns Protein kinases ATP-binding region signature. 189 211 IPR017441 GO:0005524(InterPro)
Hepe08g1295 523 SUPERFAMILY Protein kinase-like (PK-like) 164 455 IPR011009 -
Hepe08g1295 523 FunFam Putative receptor-like serine/threonine-protein kinase 259 469 - -
Hepe08g1295 523 CDD STKc_IRAK 189 455 - -
Hepe08g1295 523 FunFam Probable serine/threonine-protein kinase At1g01540 163 258 - -
Hepe08g1295 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g1295 523 ProSiteProfiles Protein kinase domain profile. 183 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g1295 523 MobiDBLite consensus disorder prediction 489 503 - -
Hepe08g1295 523 PANTHER OS01G0323000 PROTEIN 6 492 IPR052232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1969 Hepe-Chr5:70136357 Hepe08g1295 Hepe-Chr8:14484578 3.23e-206 dispersed
Hepe07g0126 Hepe-Chr7:1137360 Hepe08g1295 Hepe-Chr8:14484578 1.23e-69 dispersed
Hepe08g0621 Hepe-Chr8:5451857 Hepe08g1295 Hepe-Chr8:14484578 7.61e-179 dispersed
Hepe08g1295 Hepe-Chr8:14484578 Hepe08g2232 Hepe-Chr8:62070809 5.72e-156 dispersed
Hepe09g0235 Hepe-Chr9:2049108 Hepe08g1295 Hepe-Chr8:14484578 1.08e-71 dispersed
Hepe02g0511 Hepe-Chr2:5123136 Hepe08g1295 Hepe-Chr8:14484578 3.43e-171 transposed
Hepe04g1254 Hepe-Chr4:68027821 Hepe08g1295 Hepe-Chr8:14484578 1.86e-245 wgd
Hepe05g0548 Hepe-Chr5:7566881 Hepe08g1295 Hepe-Chr8:14484578 4.63e-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73064 PF00069 Pkinase 3.10E-47 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1295 - - - 0.0