Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1296 ATGGCGGATCTGTATGGAACTTCTCCTTCTTCAGATATTGTTGGTTTGCCGCATGACCCAGAAGATTTCTCTTCCTTAATCAATCACCATCTTCAAACCACCCCTTCTTCTTCTTCCTCCCCTTCTTTTATCTCCTTCAAAAATGGGTTCATGCCGTTGTTGCATTCTCAACGTCCTTGGCAGCACTCTTCGTCCTCTCTGTTTCCACGGCGGCCGGAGTCCACTTCCGTTGCCGGAGTGTCCTGCATGCTGGATTTTCCCGAGGATCGGCTTCTTCAGTCGAGTCGTCGTGTTTTGAACCACGCTTTCTCTGATTGTAGTGTTAGGGATGCGAGATTTGCCGATGCTTCGTATTTGGCTGTGAAATTGTCGGATCCTGGGGATTTCCTTAAAGAATGTTCCGACAACGCGTTTTCTTCCTCCGGCGCTGTCGATTCCGATACTAATGCGCCGTTCAAGAGAAGGGGTCTTTCATCTGAAAATGATCTTGGGGATTTCAGTTGTGATAGCGAGGGTGCTGATATTCCTGAAGAACTTCCATCCTGTACTGATCTGAATCGAAGTTCATCTAAGAGAAGTAGAAGCGCTGAGGTCCATAATATGTCGGAGAAGAGAAGAAGAAAGAGGATCAATGAGAAAATGAAAGCCCTTCAGAACCTAATTCCAAATTCGAACAAGACAGACAAAGCTTCAATGTTGGATGAAGCAATTGAGTATTTGAAGCAGCTTCAACTTCAAGTGCAGATGTTATCAATGAGAAATGGCTTGAGTTTGCAACCAATGTGCTTGCCAGGAATGCTGCAGCCAATTCAACTACCTCAGATGGGGTTGGACTTTGACGTAGGAAATGCATTTCTAGCATCCAGAAGAGGAATCAACGCGCCGTCTACTGGGAATGAAGGGTGTCCCATGCAATCGACATTCAATCTTTCCAACAAATGTAACCTTTCAGATCAGTCAATAGCCGTCCCTTCTGTACCAAACACCACAACTTCAGAAACCGCATTCGGGTTTGAACCCGCGATTCAGGCTTACGACGTGCAGTTTGACCTTTCCTCTGATTTCAAGGATGCCCAACCAGGCACGGATTTAGATTGCGCTCGGACGAGAAAGGACTCAGCAGACGCGTCCTAG 1134 46.56 MADLYGTSPSSDIVGLPHDPEDFSSLINHHLQTTPSSSSSPSFISFKNGFMPLLHSQRPWQHSSSSLFPRRPESTSVAGVSCMLDFPEDRLLQSSRRVLNHAFSDCSVRDARFADASYLAVKLSDPGDFLKECSDNAFSSSGAVDSDTNAPFKRRGLSSENDLGDFSCDSEGADIPEELPSCTDLNRSSSKRSRSAEVHNMSEKRRRKRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLQPMCLPGMLQPIQLPQMGLDFDVGNAFLASRRGINAPSTGNEGCPMQSTFNLSNKCNLSDQSIAVPSVPNTTTSETAFGFEPAIQAYDVQFDLSSDFKDAQPGTDLDCARTRKDSADAS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14495901 14499669 - Hsped.08g12960.1 Hepe08g1296 577268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1296 377 Gene3D - 189 253 IPR036638 GO:0046983(InterPro)
Hepe08g1296 377 SMART finulus 200 249 IPR011598 GO:0046983(InterPro)
Hepe08g1296 377 MobiDBLite consensus disorder prediction 361 377 - -
Hepe08g1296 377 FunFam Basic helix-loop-helix transcription factor 189 252 - -
Hepe08g1296 377 MobiDBLite consensus disorder prediction 190 207 - -
Hepe08g1296 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983(InterPro)
Hepe08g1296 377 Pfam Helix-loop-helix DNA-binding domain 197 244 IPR011598 GO:0046983(InterPro)
Hepe08g1296 377 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 76 354 IPR031066 GO:0005634(PANTHER)
Hepe08g1296 377 MobiDBLite consensus disorder prediction 163 207 - -
Hepe08g1296 377 Coils Coil 233 253 - -
Hepe08g1296 377 MobiDBLite consensus disorder prediction 358 377 - -
Hepe08g1296 377 CDD bHLH_AtPIF_like 196 256 IPR047265 -
Hepe08g1296 377 Coils Coil 200 220 - -
Hepe08g1296 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 254 IPR036638 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1296 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2482 Hepe-Chr7:69128668 Hepe08g1296 Hepe-Chr8:14495901 6.96e-19 dispersed
Hepe08g1296 Hepe-Chr8:14495901 Hepe08g2224 Hepe-Chr8:61989217 3.75e-26 dispersed
Hepe08g1290 Hepe-Chr8:14350005 Hepe08g1296 Hepe-Chr8:14495901 3.44e-08 proximal
Hepe04g1255 Hepe-Chr4:68034645 Hepe08g1296 Hepe-Chr8:14495901 1.48e-42 wgd
Hepe05g0556 Hepe-Chr5:7775011 Hepe08g1296 Hepe-Chr8:14495901 4.47e-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g744 . . . . . . . . Cmo05g00172 Cmo12g00502 . . . Car12g00514 Sed10g1234 . Cpe07g00491 Bhi04g00369 Tan02g1798 Cmetu03g0637 . Hepe08g1296 . Lcy13g2092 . . . . . . . Cone4ag1587 Cone7ag1362 . . . . . Cme03g02063 Blo17g00875 . . . . . . Bma05g00041 . . . Cma12g00559 Cma05g00174 Car05g00147 . Cpe11g00143 . . . . . . . . . . . . . . . . Csa02g01934 Chy03g01556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007940 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56205 PF00010 HLH 1.90E-14 No_clan Hepe TF