Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1297 ATGCAAGGGCAAAGGAGTAGTGTTGGTTCTTTGTCAGAAACCATAAACTTTGAACATGGATCTTCATCAAATAATTCTGGTAACCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAGAACCGAATACCAGATTATTTATTACCTACTTCTGATATAAATACTGGATATGTAAGCTCTGTAAGCCATGAGCAACGAGGTTTGAGCAGATGGAGCTTGGGTGAACCTAGCTCTTGTGATATGCAAACTGAGGCGCTACCTGATGAGCAGAAAGCTGAGCTTGTTGGATGGTCTTCAGTGACTCGTGATGCAGATGGTCCAGTTACAGAAAACCGACTCTGTGAGCCGTCAAATAATCCTTCGCTGGGTCATGTGAATTTGAGCCCACTGATTATACAAAACTCCAATTCTAATGTTATTCCTCATAATCTCAACTTAAATGCAAGTTTTGCTAGTCATGGAGGTGACAATAGCAGAGTTAATGAAGGTTCTAACGTGTATAAATCTAGTGGATCAGAAGAAGGGAGGATGTTATGTTCTAGTGCATCTGATCCTCTTTTACTTCCTTCTGGAAATAGTGGACTTCCAGTGGTTGCAAATGATGGCAGAGCAGGTTCTTCCTTGGATGGTCGTCGAGCACCCTGTAAAAGAAAGTCTATTGAAGGAAGTGTTGCACAATCCTCTTTAAGTGGAAGCAGTAACTACTCTCAGCATATTGAAAGTGGTGCTGAGCCCTCTCTTTCAATTTTTCCTGGTCGCTACAACACAGGCAGTAGGTTAAGCATACCTGCTCCACCAGCACGAATGAATCAAGCACCTATACGAGGTGCAGGCGAACTGACATCCAACAGCTTCTCTGAGTCGATTGTTGCAGAAAGCTCAGAGAGTTCTCAAAGAAACTATCGTATAAGGATTAGTTCATCAAATGCACAAGATTCTTTTGCATCGACAGGAACTACTGTTAGGCATCCTGGGGCCTCATCTTCCCAGCTACCGGCAAGACTTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCACCAGCTGTAGACAATTTATCTGCTCAAGGTCAGCCGATTATGATACATGTGCCTGCTTTACCTCGAAGTCTGCAACCATATAGGTGGAATGGGAGCTCTACTTCAAGAAGTGGCGGGTCATCAAGCTCTGCAGGAGAGAGACAGGTGGTGCAACGTGAGGAGGTGGTGAGACCAAGCAACATGGGAAGAAATGTGTCTGAACATCCCATGTTTGTCCCAGCAAATGAGCTGAGAAATTTGGTTCGAAATCCATCGACTAGAGGCTTAACATCTTCGAACTTGTCCATTCCTGGAAATGTTGCTTCTACATCCAGGGTTGGTTCAAGTTCAGGGGTCGTCCATCCCTCTTCTGGACCTTGGATGCCTCCTGAGAATAGTCCAACACAGTTTCCCAGGAGGTTAACAGAATATGTTCGAAGGCAGCTATTTTCTTCTGCTGCAAATGAGTCTGGTGCTAGGACAAGTAATTATTCACAACGATCAGGTTCTACTTCTGCCCCAGATATGGTTCTTTCATCAGGATCTGGCCGCCGGGGGCACCATTTATTGCAACCGAGGTCTGCATTATGGATGGAAAGAAGAGGTGACAGTGGACTTGGTCTTCCATATTCATTACGAACCTTGGCTACTTCTAGTGAAGGAAGTGACAATAATAGACTAGTATCTGAGCAGATTCGCAATGTCTTGGGTCTTGTCCGCAGGGGTGAAAGCTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTTGGGATGGCTGATATTTATGATAGGCACAGGGATATGCGTCTCGACGTTGATAACATGTCGTATGAGGAATTGTTGGCTTTGGAAGAGCGTATCGGAAATGTGAACACCGGACTAAACGAAGAGACGATAGTTTCCCGACTGAAACAAAGGAAGCATGTCAATGCTGTGGAATCACAGGTGGAGGAAGAACCATGCTGTGTTTGTCAGGAGGAATACATGGAAGGAGAAGACATCGGAATGCTGGAATGCGGGCACGGCTTCCACACACGTTGTATTAAGCAGTGGCTGATGCAAAAGAATCTGTGTCCCATCTGCAAAACAACTGGTTTAGGAAGCCGAGAATGA 2145 44.99 MQGQRSSVGSLSETINFEHGSSSNNSGNQPVYWNNMWNPAENRIPDYLLPTSDINTGYVSSVSHEQRGLSRWSLGEPSSCDMQTEALPDEQKAELVGWSSVTRDADGPVTENRLCEPSNNPSLGHVNLSPLIIQNSNSNVIPHNLNLNASFASHGGDNSRVNEGSNVYKSSGSEEGRMLCSSASDPLLLPSGNSGLPVVANDGRAGSSLDGRRAPCKRKSIEGSVAQSSLSGSSNYSQHIESGAEPSLSIFPGRYNTGSRLSIPAPPARMNQAPIRGAGELTSNSFSESIVAESSESSQRNYRIRISSSNAQDSFASTGTTVRHPGASSSQLPARLLPAEHVLDLRPAPAVDNLSAQGQPIMIHVPALPRSLQPYRWNGSSTSRSGGSSSSAGERQVVQREEVVRPSNMGRNVSEHPMFVPANELRNLVRNPSTRGLTSSNLSIPGNVASTSRVGSSSGVVHPSSGPWMPPENSPTQFPRRLTEYVRRQLFSSAANESGARTSNYSQRSGSTSAPDMVLSSGSGRRGHHLLQPRSALWMERRGDSGLGLPYSLRTLATSSEGSDNNRLVSEQIRNVLGLVRRGESLRVEDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLNEETIVSRLKQRKHVNAVESQVEEEPCCVCQEEYMEGEDIGMLECGHGFHTRCIKQWLMQKNLCPICKTTGLGSRE 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14505475 14510736 - Hsped.08g12970.1 Hepe08g1297 577269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1297 714 MobiDBLite consensus disorder prediction 434 463 - -
Hepe08g1297 714 MobiDBLite consensus disorder prediction 374 396 - -
Hepe08g1297 714 MobiDBLite consensus disorder prediction 154 184 - -
Hepe08g1297 714 MobiDBLite consensus disorder prediction 374 401 - -
Hepe08g1297 714 SUPERFAMILY RING/U-box 657 708 - -
Hepe08g1297 714 MobiDBLite consensus disorder prediction 1 29 - -
Hepe08g1297 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 709 IPR013083 -
Hepe08g1297 714 MobiDBLite consensus disorder prediction 493 528 - -
Hepe08g1297 714 MobiDBLite consensus disorder prediction 199 241 - -
Hepe08g1297 714 MobiDBLite consensus disorder prediction 434 476 - -
Hepe08g1297 714 FunFam E3 ubiquitin-protein ligase MBR2 633 710 - -
Hepe08g1297 714 ProSiteProfiles Zinc finger RING-type profile. 665 706 IPR001841 -
Hepe08g1297 714 MobiDBLite consensus disorder prediction 154 178 - -
Hepe08g1297 714 SMART ring_2 665 705 IPR001841 -
Hepe08g1297 714 MobiDBLite consensus disorder prediction 222 241 - -
Hepe08g1297 714 MobiDBLite consensus disorder prediction 493 519 - -
Hepe08g1297 714 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 212 710 IPR045191 GO:0061630(PANTHER)|GO:0061630(InterPro)
Hepe08g1297 714 Pfam Ring finger domain 665 706 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1297 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1417 Hepe-Chr1:79385976 Hepe08g1297 Hepe-Chr8:14505475 2.03e-28 dispersed
Hepe07g0999 Hepe-Chr7:13641359 Hepe08g1297 Hepe-Chr8:14505475 1.92e-32 dispersed
Hepe07g2372 Hepe-Chr7:68088505 Hepe08g1297 Hepe-Chr8:14505475 5.64e-31 dispersed
Hepe08g1297 Hepe-Chr8:14505475 Hepe10g0318 Hepe-Chr10:3390759 6.64e-31 dispersed
Hepe08g1297 Hepe-Chr8:14505475 Hepe01g2088 Hepe-Chr1:85499001 1.81e-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g742 . . . . . . . . . Cmo12g00503 . . . Car12g00516 . . Cpe07g00492 Bhi04g00371 Tan02g1796 . . Hepe08g1297 . Lcy13g2093 . . . . . . . . . . . . . . Cme03g02064 Blo17g00874 . . Bda01g01607 Bpe02g01796 . Bma01g00659 . . . . Cma12g00560 . . . . . . . . . . . . . . . . . . . . . Chy03g01557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55