Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g1298 | ATGGGATTAAGCATGAAGGTTCATCACTTTGCACGTGGCTTTTGGGACGAACCCTCTCTCACTCTCAGCTGCAAGCGCCTACGCCCTCTTGCTCCTAACCACCACCTCCAACAACAACAACAACAAACCACCACCACCACCACTCTCACCGCTTTCGACCTCAAAACCTTCATCCGACCCGATTCTGGCCCTAGAAAATCTGGCTCCTCCTCCGATCACAACAAACATTCCTCTTCGCCTTCGCCGCCACAGGGTGGCGTGGAGACGCATCCGGGAGGGACGCGGTGGAACCCAACGCAAGAACAGATAGGGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAGCAGATCACTGCCCAGCTTGCCAAGTACGGCAAGATTGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAGGCACGAGAGCGACAGAAACAGAAACGCAACAGTCTCGGTCTCGCTCACTCCCCTAGAACACCTCCTCCTCCCATCTTCACCGCCATCCCCTTCGACCCCTCGGGAGATCAAGAAGATAGTCCGTACAAGAGGAAATGCATGACGATGACGATGAATTGGGGGTTCGAGTGTTTGGTAGAAGAAAATAATAATAATAATAATGGTATATTTTGTAAAAAGGAGGAAGGTGATGGGACTCTGGAGTTATTCCCTTTGCACCCAGAAGGCAGATCATGA | 720 | 50.28 | MGLSMKVHHFARGFWDEPSLTLSCKRLRPLAPNHHLQQQQQQTTTTTTLTAFDLKTFIRPDSGPRKSGSSSDHNKHSSSPSPPQGGVETHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEQITAQLAKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTPPPPIFTAIPFDPSGDQEDSPYKRKCMTMTMNWGFECLVEENNNNNNGIFCKKEEGDGTLELFPLHPEGRS | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 14555717 | 14556774 | - | Hsped.08g12980.1 | Hepe08g1298 | 577270 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g1298 | 239 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 4 | 238 | IPR044186 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro) | |
Hepe08g1298 | 239 | MobiDBLite | consensus disorder prediction | 152 | 188 | - | - | |
Hepe08g1298 | 239 | MobiDBLite | consensus disorder prediction | 57 | 99 | - | - | |
Hepe08g1298 | 239 | FunFam | WUSCHEL-related homeobox 4 | 93 | 160 | - | - | |
Hepe08g1298 | 239 | SUPERFAMILY | Homeodomain-like | 87 | 159 | IPR009057 | - | |
Hepe08g1298 | 239 | CDD | homeodomain | 94 | 155 | IPR001356 | GO:0003677(InterPro) | |
Hepe08g1298 | 239 | SMART | HOX_1 | 91 | 158 | IPR001356 | GO:0003677(InterPro) | |
Hepe08g1298 | 239 | Pfam | Homeodomain | 94 | 153 | IPR001356 | GO:0003677(InterPro) | |
Hepe08g1298 | 239 | Gene3D | - | 93 | 160 | - | - | |
Hepe08g1298 | 239 | ProSiteProfiles | 'Homeobox' domain profile. | 89 | 154 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe08g1298 | Hepe-Chr8:14555717 | Hepe10g1216 | Hepe-Chr10:47217185 | 4.80e-29 | dispersed | |
Hepe08g1298 | Hepe-Chr8:14555717 | Hepe07g2356 | Hepe-Chr7:67936044 | 2.65e-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56206 | PF00046 | Homeodomain | 4.40E-19 | CL0123 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g1298 | - | - | - | 0.0 |