Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1298 ATGGGATTAAGCATGAAGGTTCATCACTTTGCACGTGGCTTTTGGGACGAACCCTCTCTCACTCTCAGCTGCAAGCGCCTACGCCCTCTTGCTCCTAACCACCACCTCCAACAACAACAACAACAAACCACCACCACCACCACTCTCACCGCTTTCGACCTCAAAACCTTCATCCGACCCGATTCTGGCCCTAGAAAATCTGGCTCCTCCTCCGATCACAACAAACATTCCTCTTCGCCTTCGCCGCCACAGGGTGGCGTGGAGACGCATCCGGGAGGGACGCGGTGGAACCCAACGCAAGAACAGATAGGGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAGCAGATCACTGCCCAGCTTGCCAAGTACGGCAAGATTGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAGGCACGAGAGCGACAGAAACAGAAACGCAACAGTCTCGGTCTCGCTCACTCCCCTAGAACACCTCCTCCTCCCATCTTCACCGCCATCCCCTTCGACCCCTCGGGAGATCAAGAAGATAGTCCGTACAAGAGGAAATGCATGACGATGACGATGAATTGGGGGTTCGAGTGTTTGGTAGAAGAAAATAATAATAATAATAATGGTATATTTTGTAAAAAGGAGGAAGGTGATGGGACTCTGGAGTTATTCCCTTTGCACCCAGAAGGCAGATCATGA 720 50.28 MGLSMKVHHFARGFWDEPSLTLSCKRLRPLAPNHHLQQQQQQTTTTTTLTAFDLKTFIRPDSGPRKSGSSSDHNKHSSSPSPPQGGVETHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEQITAQLAKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTPPPPIFTAIPFDPSGDQEDSPYKRKCMTMTMNWGFECLVEENNNNNNGIFCKKEEGDGTLELFPLHPEGRS 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14555717 14556774 - Hsped.08g12980.1 Hepe08g1298 577270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1298 239 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 238 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Hepe08g1298 239 MobiDBLite consensus disorder prediction 152 188 - -
Hepe08g1298 239 MobiDBLite consensus disorder prediction 57 99 - -
Hepe08g1298 239 FunFam WUSCHEL-related homeobox 4 93 160 - -
Hepe08g1298 239 SUPERFAMILY Homeodomain-like 87 159 IPR009057 -
Hepe08g1298 239 CDD homeodomain 94 155 IPR001356 GO:0003677(InterPro)
Hepe08g1298 239 SMART HOX_1 91 158 IPR001356 GO:0003677(InterPro)
Hepe08g1298 239 Pfam Homeodomain 94 153 IPR001356 GO:0003677(InterPro)
Hepe08g1298 239 Gene3D - 93 160 - -
Hepe08g1298 239 ProSiteProfiles 'Homeobox' domain profile. 89 154 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1298 Hepe-Chr8:14555717 Hepe10g1216 Hepe-Chr10:47217185 4.80e-29 dispersed
Hepe08g1298 Hepe-Chr8:14555717 Hepe07g2356 Hepe-Chr7:67936044 2.65e-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56206 PF00046 Homeodomain 4.40E-19 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1298 - - - 0.0