Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1309 ATGGGCGGGTTTAATTTTGGAAGGCAATTTCAAAGCGAAAAAATAAAAAAGTTGGAATACCCGGGAAAACCAAAACTAAAAATATTAAAATTAAAAAAACATTTCAAACCCCAAATTCCAAATTGCAAAAAAATTGGCTCTCTCTTTCTCAGTAGCGCGAAATCGTTTTTCTGCGTTTTTCGCTTTTCAAAACCTCAGCAAAAAAATGGCGGTCTTCTTCTTCTTCCTCCTAAATTCCTTTTCCCTTCTCTACAAAGTCCCCTTCACATCTCCTTCTCCTACTCACCCTTTGATTTTTCTCTCTCCGTATCTCTCTCGGTTTCGATTTCGATTTCAATTTCCTATCCAATGGCCGAGACAGATAATTGTGTCCGTGTTACTCGCGCTTCTAACAAGCGAGCTGGGACGGCCGCCATGCCCGAGGATCAATCCGCCAATAAAAAGCGGGTGGTTCTCGGAGAACTTTCTAACATTCAGAATGTTACTCGCTCACTCCCACAGAAGAGGAGGGCAAAATCCCAGATTACCAAATGCAAACCCAAGAAGAGAACTAAGATTACTGCTGCTCCAACGACCAAGGCGACTGTTGTTGTTGAAGATGATAATGATCCCAACTTGACTGTTGATGATATTCTGGACGACCCAGAAATGAAAAACCCTTATTCCTCCGATATTTATGCTTATCTTCGTAAAATGGAGGCGGAACCGAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAAGTTGCTGAGGAATACAAACTCGGCTCGGATTCTCTGTATCTGTCCATCTCTTACCTCGATAGGTACCTATCAATGAACATCCTCAGTAGGCAAAGACTTCAATTATTGGGGGTTTCGGCAATGCTTATTGCCTCGAAGTATGAAGAGATCACTCCTCCAAACGTGGAGGATTTCTGTTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATACTCAAGTCTTTGAACTTTGAGATGGGAAATCCTACTGCCAAGACGTTCTTGAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAGTACCAAATCTACAGTTGGAATTTCTGGGTTATTACCTTGCTGAGCTTAGCCTACTGGACTATAATTTTGTCAAGTTCTTGCCTTCTTTGATTGCTTCATCAGTTGTATTTCTTACTAAATTTATCATCCAGCCAAAGCTGCATCCTTGGGGTTCAAACTTGCAAAAATACACAGGCTACAAGCCAGCTGATCTGAGGCCATGTGTCCTTCTTTTACATGATTTGTATATGGCCAGAAGAGGGGGATCTCTGATTGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTGGCAATGATGCCTTCACCCCCTGAGATACCGTTTTCCTACTTCCAAGAAGCTTAG 1470 41.5 MGGFNFGRQFQSEKIKKLEYPGKPKLKILKLKKHFKPQIPNCKKIGSLFLSSAKSFFCVFRFSKPQQKNGGLLLLPPKFLFPSLQSPLHISFSYSPFDFSLSVSLSVSISISISYPMAETDNCVRVTRASNKRAGTAAMPEDQSANKKRVVLGELSNIQNVTRSLPQKRRAKSQITKCKPKKRTKITAAPTTKATVVVEDDNDPNLTVDDILDDPEMKNPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDSLYLSISYLDRYLSMNILSRQRLQLLGVSAMLIASKYEEITPPNVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKVPNLQLEFLGYYLAELSLLDYNFVKFLPSLIASSVVFLTKFIIQPKLHPWGSNLQKYTGYKPADLRPCVLLLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFQEA 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14807717 14812514 - Hsped.08g13090.1 Hepe08g1309 577281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1309 489 CDD CYCLIN_AtCycA-like_rpt2 355 469 - -
Hepe08g1309 489 SUPERFAMILY Cyclin-like 213 352 IPR036915 -
Hepe08g1309 489 SMART cyclin_7 262 346 IPR013763 -
Hepe08g1309 489 SMART cyclin_7 359 447 IPR013763 -
Hepe08g1309 489 Gene3D - 224 474 - -
Hepe08g1309 489 SUPERFAMILY Cyclin-like 355 480 IPR036915 -
Hepe08g1309 489 ProSitePatterns Cyclins signature. 257 288 IPR048258 -
Hepe08g1309 489 FunFam Mitotic cyclin 6 240 340 - -
Hepe08g1309 489 MobiDBLite consensus disorder prediction 170 186 - -
Hepe08g1309 489 Gene3D - 240 353 - -
Hepe08g1309 489 SMART Cyclin_C_2 355 478 IPR004367 -
Hepe08g1309 489 Pfam Cyclin, C-terminal domain 355 477 IPR004367 -
Hepe08g1309 489 Pfam Cyclin, N-terminal domain 224 352 IPR006671 -
Hepe08g1309 489 PANTHER CYCLINS 199 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe08g1309 489 MobiDBLite consensus disorder prediction 164 186 - -
Hepe08g1309 489 FunFam Cyclin A1 342 474 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2221 Hepe-Chr2:62982401 Hepe08g1309 Hepe-Chr8:14807717 1.11e-93 dispersed
Hepe03g1583 Hepe-Chr3:72721886 Hepe08g1309 Hepe-Chr8:14807717 2.56e-90 dispersed
Hepe08g1309 Hepe-Chr8:14807717 Hepe08g1314 Hepe-Chr8:14928233 5.48e-247 dispersed
Hepe08g1309 Hepe-Chr8:14807717 Hepe08g1310 Hepe-Chr8:14851347 1.36e-250 tandem
Hepe01g1808 Hepe-Chr1:83084556 Hepe08g1309 Hepe-Chr8:14807717 2.16e-159 wgd
Hepe02g0630 Hepe-Chr2:6598898 Hepe08g1309 Hepe-Chr8:14807717 2.07e-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1309 K06627 - csv:101206145 632.484