Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1310 ATGGCTGAGACAGATAACTGTGTCCGTGTTACTCGCGCTTCTAACAAGCCAGCTGCGACGGCCGCCATGCCCGAGGATCATTCCGCCAATAAAAAGCGTGTGGTTCTCGGATTGCTTTCTAACATTCAGAATGTTACTCGCTCACTCCCACAGAAGAGGAGGGCAAAATCCAAGATTACCAAATGCAAACCCAAGAGGAGAATTAAGATTACTGCTGCTCCAACGATCAAGGCGACTGTTGTTGTTGAAGATGATAATGATCCCAACTTGACTGTTGATGATATTCTGGACGACCCAGAAATGAAAAACCCTTATTCCTCCGATATTTATGCTTATCTTCGTAAAATGGAGGCGGAACCGAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAAGTTGCTGAGGAATACAAACTCGGCTCGGATTCTCTGTATCTGTCCATCTCTTACCTCGATAGGTACCTATCAATGAACATCCTCAGTAGGCAAAGGCTTCAATTATTGGGGGTTTCGGCAATGCTTATTGCCTCGAAGTATGAAGAGATCACTCCTCCAAACGTGGAGGATTTCTGTTACATAACAGAGAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATACTCAAGTCTTTGAACTTTGAGATGGGAAATCCTACTGCCAAGACGTTCTTGAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAGTACCAAATCTGCAGTTGGAATTTCTGGGTTGTTACCTTGCTGAGCTTAGCCTATTGGATTATAATTTTGTCAAGTTCTTGCCTTCTTTGATTGCTTCATCAGTTGTATTTCTTGCAAAATTTATCATCCAGCCAAAGCTGCATCCTTGGGGTTCAAACTTGCAAAAAAACACAGGCTACAAGCCAGCTGATCTGAGGCCATGTGTCCTTCTTTTACATGATTTGTATATGGCCAGAAGAGGGGGATCTCTGATTGCTGTTAGAGAAAAATACAAGCTACCTAGGTTCAAATGTGTGGCAATGATGCCTTCATCCCCTGAGATACCGCTTTCCTACTTCGAAGAATCTTAA 1122 42.78 MAETDNCVRVTRASNKPAATAAMPEDHSANKKRVVLGLLSNIQNVTRSLPQKRRAKSKITKCKPKRRIKITAAPTIKATVVVEDDNDPNLTVDDILDDPEMKNPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDSLYLSISYLDRYLSMNILSRQRLQLLGVSAMLIASKYEEITPPNVEDFCYITENTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKVPNLQLEFLGCYLAELSLLDYNFVKFLPSLIASSVVFLAKFIIQPKLHPWGSNLQKNTGYKPADLRPCVLLLHDLYMARRGGSLIAVREKYKLPRFKCVAMMPSSPEIPLSYFEES 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14851347 14854128 - Hsped.08g13100.1 Hepe08g1310 577282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1310 373 Gene3D - 124 237 - -
Hepe08g1310 373 Pfam Cyclin, C-terminal domain 239 361 IPR004367 -
Hepe08g1310 373 SUPERFAMILY Cyclin-like 97 236 IPR036915 -
Hepe08g1310 373 CDD CYCLIN_AtCycA-like_rpt2 239 353 - -
Hepe08g1310 373 ProSitePatterns Cyclins signature. 141 172 IPR048258 -
Hepe08g1310 373 PIRSF Cyclin_A_B_D_E 2 368 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Hepe08g1310 373 SMART Cyclin_C_2 239 362 IPR004367 -
Hepe08g1310 373 SUPERFAMILY Cyclin-like 239 362 IPR036915 -
Hepe08g1310 373 PANTHER CYCLINS 85 349 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe08g1310 373 MobiDBLite consensus disorder prediction 1 27 - -
Hepe08g1310 373 Gene3D - 108 358 - -
Hepe08g1310 373 FunFam Mitotic cyclin 6 124 224 - -
Hepe08g1310 373 FunFam Cyclin A1 226 358 - -
Hepe08g1310 373 Pfam Cyclin, N-terminal domain 108 236 IPR006671 -
Hepe08g1310 373 SMART cyclin_7 243 331 IPR013763 -
Hepe08g1310 373 SMART cyclin_7 146 230 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1808 Hepe-Chr1:83084556 Hepe08g1310 Hepe-Chr8:14851347 1.86e-154 dispersed
Hepe02g0630 Hepe-Chr2:6598898 Hepe08g1310 Hepe-Chr8:14851347 5.29e-95 dispersed
Hepe08g0180 Hepe-Chr8:1558417 Hepe08g1310 Hepe-Chr8:14851347 8.31e-39 dispersed
Hepe08g1310 Hepe-Chr8:14851347 Hepe10g0294 Hepe-Chr10:3124022 3.85e-79 dispersed
Hepe08g1310 Hepe-Chr8:14851347 Hepe08g1314 Hepe-Chr8:14928233 4.73e-248 proximal
Hepe08g1309 Hepe-Chr8:14807717 Hepe08g1310 Hepe-Chr8:14851347 1.36e-250 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1310 K06627 - csv:101206145 625.55