Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1313 ATGGCTTCCCACTCAAACCACTTCCAATTTGCCATTTTTACTTCCATTTTAGTTTTGAAATATTGTTCATTTCCTGGTGTTGGATCAGCTGCTTTGAATCTTAACACAGACAAACAAGCTTTGATTGCAATCAAGTCTGCATTTTACAATAATCAGCCTCTGAATGCCATCTCTTCTTGGAATCAAACTTCATCTCCCTGCAATTGGGTCGGCATTAGCTGCACCAGAGACGGCAACCGAGTTGTTAGCCTGAATCTCACAGGCTTTCAACTCTCAGGCTACATCGATCCTCATATTGGGAACCTTTCCTTCCTTCATTCACTTCAACTCCAGAGCAATCAATTAACCGGGCCGATCCCAGATCAAATCACCAATCTTTTTCGCTTGAGAGTTTTGAATATGAGTTTCAACAATTTACAAGGCCAATTACCCTCCAACATCAGCAAAATGGTTGATCTCGAGACCCTCGATTTGATGTCCAACAAAATCAATGGGAGACTCCCTAACGAGCTCACCCAATTGACCAAGCTTCAAGTTCTTATTTTGGCACAAAACCAACTCTACGGTTCAATCCCACCATCTTTTGGTAATCTTTCTTCACTTGTTACCATAAATTTAGGCACAAATTCAATTAGTGGCCCCATTCCCACCCAATTAGCCACTCTTCCAAATTTGAAGGACTTGATTATCACCATTAACAACCTCTCTGGCTCTGTTCCTCCCAGCATATTCAACATGTCTTCCTTAGTCACTCTGGCCTTGGCCTCCAACCAACTTTGGGGAACATTTCCCAAAGATATCGGACAAAAGCTCCCAAATCTTCTAGTATTCAATTTCTGCTTCAACAAATTTACAGGAACGATTCCTGAGTCGTTGCATAACATCACAAGAATACATGTCATACGCTTTGCCCACAACTTTCTTGAAGGGACAGTCCCACCAGGTCTCGAGAAACTTCACAATCTCTCAATGTACAACATTGGATACAACAATCTTGTAGGTTCAGATGCAAATGGGGGCCTCAATTTTATCACTTCCTTGACCAACAGCTCGCGCCTCGCCTTTCTAGCTCTTGATGGCAACAATTTTGAAGGTGTGATTCCGGATTCCATTGGGAATCTCTCCAAGGATCTTTCTAAGTTGTACATGGGACAGAATCGTCTATATGGGAATATACCCACCACAATTTCTAATCTGCAGGGCTTGTCTCTGCTGAATTTGAGCGACAATTCATTATCAGGTGAAATCCCATCTCAACTCGGCAAACTGGGAAAACTTCAAATGCTTATTTTGGCAAGGAATCGATTTTCTGGTACTATTCCAACTTCTTTGGGTGATCTTCAAATGTTGAATGAAATTGATCTAACAGGAAACGATTTGGTTGGTAACATACCCACCTCTTTTGGGAACTTTAAGAATCTGCTCTTCTTGGATTTGTCCAAAAACAACCTCAATGGAAGTATACCCAGAGAGACTCTCAATTTTCCTGGTTTAAGTAAAGTTTTAAATTTGTCCAATAACCATTTCAGTGGGTCTCTTCCTCAAGAAATTGGGTCTCTTGAAAATGTTGTCACCATCGATATCTCTAACAATCATATCTCTGGTAATATCCCTCCTTCAATTAGTGGTTGCAAAAGCTTAGAGGTATTGAAAATGGCCAACAATGAATTCTCAGGTCCAATTCCAAGAACTTTACAAGATCTTAGAGGCCTCCAGCTTCTGGATCTCTCCTCGAACCATCTTTCAGGCCCCATTCCTAATGAGCTTCAACAATTAAAAGCTCTTCAAACTTTAAACCTCTCTTTCAATGATCTGGAGGGATTTGTTCCAACAGAGTTAAAAAACATCACTACCCTTTATTTAGAAGGCAATCCAAAGCTTTGTGATGAACAATTCTCATGTGCAGCGACAGGGACAAAAGGAAAAGTGATTAAAATTGTTGTGGTCTCTGTTTTATCAGCAGTGTTGGCAATATTTCTTGTATTTGGTACTCTGGTTTACCTCACGAGAAGAAAATCAAAGGGTACATCATCATTATCAACTGAATTTCTAAAGGGTATGCCTGAAATGATCTCCTATCGTGAGCTTTGTTTGGCAACTGAGAATTTCAGCTCAGAAAATTTGATTGGGAAAGGGAGCTTTGGGACTGTGTACAGAGGCTGTTTGAAACAGGGGATTACTATTGCAGTCAAGGTTCTCAACACTGAACGAGCTGGTTCTGTGAGGAGCTTTCTTGCAGAGTGTGAGGCTTTACGAAATGTGAGACATCGAAATCTTGTTAAGCTAATCACATCATGTTCCAGCATAGACTTCAAACGCAAGGAGTTTCTTGCTTTGGTTTATGAGTTTCTAAGTAATGGAAGCTTGGATTCATGGATTCATAAGAATAAATTTCATGCAGATGGAAGTGGGCTAAGTTTATTGGAGAGATTGAACATTGCCATTGATGTTTCTTCTGTGTTGGATTATCTCCATAATGGTTACGATGTTCCAATTGTTCACTGTGATTTGAAGCCCAGCAACATTATTTTGTCGGAAGATATGACTGCGAAAGTTGGGGATTTTGGGTTAGCTCGTTTGCTGATGGAAGGTGAAAATAGTCAATCTTCTTCCATTACTTCCAGTAATGTGTTAAAGGGTTCCATTGGCTATGTTCCTCCAGAATATGGAGTGGGAAGAAAGCCTACAACAGCTGGAGATGTGTATAGTTTTGGAGTAACATTGCTGGAGCTTTTTACAGGGAAATGTCCAACTAATGAATGTTTTTCAGGAGAGCTAAATTTGATCAAATGGGTTCAATTAGCTTACCCAAAGAACATGGATGAAATAGTGGAGTCTAGCCTATTAGAATCACGTTTCAACTTATACTATGAAGAACAAGAAATTAAGGCAACCAAACAGTGGGATTGCCTCATTGATGTCATGGGTGTTGGACTCTCTTGCACTGCAGATTCGCCTCAAAAGCGCAGTAGCATGAAAGACGTCTTCTTAAAGCTCAGGATGATTAGAGCCACTCTTACTCATCCTAATTCAAATGGGAATGATGAGTAA 3051 40.31 MASHSNHFQFAIFTSILVLKYCSFPGVGSAALNLNTDKQALIAIKSAFYNNQPLNAISSWNQTSSPCNWVGISCTRDGNRVVSLNLTGFQLSGYIDPHIGNLSFLHSLQLQSNQLTGPIPDQITNLFRLRVLNMSFNNLQGQLPSNISKMVDLETLDLMSNKINGRLPNELTQLTKLQVLILAQNQLYGSIPPSFGNLSSLVTINLGTNSISGPIPTQLATLPNLKDLIITINNLSGSVPPSIFNMSSLVTLALASNQLWGTFPKDIGQKLPNLLVFNFCFNKFTGTIPESLHNITRIHVIRFAHNFLEGTVPPGLEKLHNLSMYNIGYNNLVGSDANGGLNFITSLTNSSRLAFLALDGNNFEGVIPDSIGNLSKDLSKLYMGQNRLYGNIPTTISNLQGLSLLNLSDNSLSGEIPSQLGKLGKLQMLILARNRFSGTIPTSLGDLQMLNEIDLTGNDLVGNIPTSFGNFKNLLFLDLSKNNLNGSIPRETLNFPGLSKVLNLSNNHFSGSLPQEIGSLENVVTIDISNNHISGNIPPSISGCKSLEVLKMANNEFSGPIPRTLQDLRGLQLLDLSSNHLSGPIPNELQQLKALQTLNLSFNDLEGFVPTELKNITTLYLEGNPKLCDEQFSCAATGTKGKVIKIVVVSVLSAVLAIFLVFGTLVYLTRRKSKGTSSLSTEFLKGMPEMISYRELCLATENFSSENLIGKGSFGTVYRGCLKQGITIAVKVLNTERAGSVRSFLAECEALRNVRHRNLVKLITSCSSIDFKRKEFLALVYEFLSNGSLDSWIHKNKFHADGSGLSLLERLNIAIDVSSVLDYLHNGYDVPIVHCDLKPSNIILSEDMTAKVGDFGLARLLMEGENSQSSSITSSNVLKGSIGYVPPEYGVGRKPTTAGDVYSFGVTLLELFTGKCPTNECFSGELNLIKWVQLAYPKNMDEIVESSLLESRFNLYYEEQEIKATKQWDCLIDVMGVGLSCTADSPQKRSSMKDVFLKLRMIRATLTHPNSNGNDE 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14919134 14923341 + Hsped.08g13130.1 Hepe08g1313 577285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1313 1016 Pfam Leucine Rich Repeat 153 174 IPR001611 GO:0005515(InterPro)
Hepe08g1313 1016 Pfam Leucine Rich Repeat 402 423 IPR001611 GO:0005515(InterPro)
Hepe08g1313 1016 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515(InterPro)
Hepe08g1313 1016 Pfam Leucine Rich Repeat 500 520 IPR001611 GO:0005515(InterPro)
Hepe08g1313 1016 Pfam Leucine Rich Repeat 353 374 IPR001611 GO:0005515(InterPro)
Hepe08g1313 1016 Pfam Leucine Rich Repeat 450 471 IPR001611 GO:0005515(InterPro)
Hepe08g1313 1016 Pfam Leucine Rich Repeat 105 126 IPR001611 GO:0005515(InterPro)
Hepe08g1313 1016 Pfam Leucine Rich Repeat 425 447 IPR001611 GO:0005515(InterPro)
Hepe08g1313 1016 Pfam Leucine Rich Repeat 595 615 IPR001611 GO:0005515(InterPro)
Hepe08g1313 1016 Pfam Leucine Rich Repeat 176 198 IPR001611 GO:0005515(InterPro)
Hepe08g1313 1016 FunFam LRR receptor-like serine/threonine-protein kinase EFR 674 783 - -
Hepe08g1313 1016 PRINTS Leucine-rich repeat signature 568 581 - -
Hepe08g1313 1016 PRINTS Leucine-rich repeat signature 474 487 - -
Hepe08g1313 1016 Gene3D Phosphorylase Kinase; domain 1 685 783 - -
Hepe08g1313 1016 SMART LRR_typ_2 568 591 IPR003591 -
Hepe08g1313 1016 SMART LRR_typ_2 471 495 IPR003591 -
Hepe08g1313 1016 SMART LRR_typ_2 126 150 IPR003591 -
Hepe08g1313 1016 SMART LRR_typ_2 399 423 IPR003591 -
Hepe08g1313 1016 SMART LRR_typ_2 222 246 IPR003591 -
Hepe08g1313 1016 SMART LRR_typ_2 592 615 IPR003591 -
Hepe08g1313 1016 SMART LRR_typ_2 520 544 IPR003591 -
Hepe08g1313 1016 SMART LRR_typ_2 174 197 IPR003591 -
Hepe08g1313 1016 Gene3D Ribonuclease Inhibitor 340 637 IPR032675 -
Hepe08g1313 1016 ProSiteProfiles Protein kinase domain profile. 703 1011 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g1313 1016 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 784 1012 - -
Hepe08g1313 1016 CDD STKc_IRAK 709 999 - -
Hepe08g1313 1016 SUPERFAMILY Protein kinase-like (PK-like) 679 999 IPR011009 -
Hepe08g1313 1016 SUPERFAMILY L domain-like 36 334 - -
Hepe08g1313 1016 SMART serkin_6 703 1002 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g1313 1016 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 34 195 - -
Hepe08g1313 1016 ProSitePatterns Protein kinases ATP-binding region signature. 709 731 IPR017441 GO:0005524(InterPro)
Hepe08g1313 1016 Gene3D Ribonuclease Inhibitor 31 94 IPR032675 -
Hepe08g1313 1016 Gene3D Ribonuclease Inhibitor 95 339 IPR032675 -
Hepe08g1313 1016 Gene3D Transferase(Phosphotransferase) domain 1 784 1015 - -
Hepe08g1313 1016 Pfam Leucine rich repeat 522 581 IPR001611 GO:0005515(InterPro)
Hepe08g1313 1016 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 232 339 - -
Hepe08g1313 1016 FunFam LRR receptor-like serine/threonine-protein kinase EFR 340 639 - -
Hepe08g1313 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g1313 1016 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 377 1003 IPR051564 GO:0016020(PANTHER)
Hepe08g1313 1016 Pfam Protein tyrosine and serine/threonine kinase 706 995 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g1313 1016 SUPERFAMILY L domain-like 350 629 - -
Hepe08g1313 1016 Pfam Leucine rich repeat N-terminal domain 34 75 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1313 Hepe-Chr8:14919134 Hepe09g0555 Hepe-Chr9:5224606 3.26e-66 dispersed
Hepe08g1313 Hepe-Chr8:14919134 Hepe08g1315 Hepe-Chr8:14947381 6.89e-145 proximal
Hepe08g1312 Hepe-Chr8:14893861 Hepe08g1313 Hepe-Chr8:14919134 6.53e-136 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73066 PF07714 PK_Tyr_Ser-Thr 1.30E-39 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1313 - - - 0.0