Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1314 ATGGCTGAGACAGATTACTGTGTCCGTATTACTCGCGCTTCTAACAAGCGAGCTGCGACGGCCGCCATGCCCGAGGGTCAATCCGCCAATAAAAAGCGTGTGGTTCTCGGATTGCTTTCTAACATTCAGAATGTTACTCGCTCACTCCCACAGAAGAGGAGGGCAAAATCCCAGATTACCAAATGCAAACCCAAGAGGAGAACTAAGATTACTGCTGCTCCAACGATCAAGGCGACTGTTGTTGTTGAAGATTACAATGATCCCAACTTAACTGTTGATGATATTCTGGACGACCCAGAAATGAAAAACCCTTATTCCTCCGATATTTATACTTATCTTCGTAAAATGGAGGCGGAACCGAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATCTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTTGCTGAGGAATACAAACTCGGCTCGGATTCTCTGTATCTGTCCATCTCTTACCTCGATAGGTACCTATCAATGAACATCCTCAATAGGCAAAGACTTCAATTATTGGGGGTTTCGGCAATGCTTATTGCCTCGAAGTATGAAGAGATCACTCCTCCAAACGTGGAGGATTTCTGTTACATAACAGAGAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATACTCAAGTCTTTGAACTTTGAGATGGGAAATCCTACTGCCAAGACGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAGTACCAAATCTGCAGTTGGAATTTCTGGGTTGTTACCTTGCTGAGCTTAGCCTATTGGATTATAATTTTGTCAAGTTCTTGCCTTCTTTGATTGCTTCATCAGTTGTATTTCTTGCAAAATTTATCATCCAGCCAAAGCTGCATCCTTGGGGTTCAAACTTGCAAAAACACACAGGCTACAAGCCAGCTGATCTGAGGCCATGTGTCCTTCTCTTACATGATTTGTATATGGCCAGAAGAGGGGGATCTCTGATTGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTGGCAATGATGCCTTCACCCCCTCAGATACTGTTTTCGTACTTCGAAGAAGCTTAG 1113 42.95 MAETDYCVRITRASNKRAATAAMPEGQSANKKRVVLGLLSNIQNVTRSLPQKRRAKSQITKCKPKRRTKITAAPTIKATVVVEDYNDPNLTVDDILDDPEMKNPYSSDIYTYLRKMEAEPKRRPIPNYIEKIQTDLSANMRGVLVDWMVEVAEEYKLGSDSLYLSISYLDRYLSMNILNRQRLQLLGVSAMLIASKYEEITPPNVEDFCYITENTYRRDEVVKMEADILKSLNFEMGNPTAKTRFTNIAQEDFKVPNLQLEFLGCYLAELSLLDYNFVKFLPSLIASSVVFLAKFIIQPKLHPWGSNLQKHTGYKPADLRPCVLLLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPQILFSYFEEA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14928233 14930027 + Hsped.08g13140.1 Hepe08g1314 577286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1314 370 PIRSF Cyclin_A_B_D_E 3 369 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Hepe08g1314 370 PANTHER CYCLINS 83 346 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe08g1314 370 ProSitePatterns Cyclins signature. 141 172 IPR048258 -
Hepe08g1314 370 SUPERFAMILY Cyclin-like 245 360 IPR036915 -
Hepe08g1314 370 Gene3D - 108 355 - -
Hepe08g1314 370 Pfam Cyclin, N-terminal domain 108 236 IPR006671 -
Hepe08g1314 370 SMART cyclin_7 146 230 IPR013763 -
Hepe08g1314 370 SMART cyclin_7 244 328 IPR013763 -
Hepe08g1314 370 FunFam Mitotic cyclin 6 124 224 - -
Hepe08g1314 370 SUPERFAMILY Cyclin-like 97 236 IPR036915 -
Hepe08g1314 370 Gene3D - 124 237 - -
Hepe08g1314 370 Pfam Cyclin, C-terminal domain 244 358 IPR004367 -
Hepe08g1314 370 FunFam Cyclin A1 226 355 - -
Hepe08g1314 370 SMART Cyclin_C_2 239 359 IPR004367 -
Hepe08g1314 370 CDD CYCLIN_AtCycA-like_rpt2 239 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1314 K06627 - - csv:101206145 619.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1309 Hepe-Chr8:14807717 Hepe08g1314 Hepe-Chr8:14928233 5.48e-247 dispersed
Hepe08g1314 Hepe-Chr8:14928233 Hepe10g0294 Hepe-Chr10:3124022 3.87e-78 dispersed
Hepe08g1310 Hepe-Chr8:14851347 Hepe08g1314 Hepe-Chr8:14928233 4.73e-248 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe01g1084 . 1 294 Core Cell Cycle Gene Families AT3G48750 86.1 2.8e-151 531.6
Hepe04g0650 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.1 2.2e-95 345.9
Hepe01g2369 . 12 308 Core Cell Cycle Gene Families AT3G48750 53.7 3.1e-94 342.0
Hepe04g0650 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.5 8.2e-154 540.0
Hepe01g2369 . 12 310 Core Cell Cycle Gene Families AT3G54180 66.0 1.2e-117 419.9
Hepe01g1084 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 6.9e-92 334.3
Hepe04g0650 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.1 4.7e-123 437.6
Hepe01g2369 . 12 310 Core Cell Cycle Gene Families AT2G38620 57.9 1.0e-93 340.1
Hepe01g2369 . 8 308 Core Cell Cycle Gene Families AT1G76540 85.7 4.4e-155 544.3
Hepe04g0650 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.0 4.8e-117 417.9
Hepe01g1084 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 2.8e-93 339.0
Hepe01g2369 . 8 308 Core Cell Cycle Gene Families AT1G20930 87.0 4.3e-158 554.3
Hepe04g0650 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 7.9e-120 427.2
Hepe01g1084 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 2.1e-96 349.4
Hepe07g1446 . 77 596 Core Cell Cycle Gene Families AT5G10270 73.6 1.0e-214 743.0
Hepe08g0036 . 372 889 Core Cell Cycle Gene Families AT5G10270 72.8 1.2e-207 719.5
Hepe07g1035 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.3e-97 353.2
Hepe06g0383 . 140 456 Core Cell Cycle Gene Families AT5G10270 54.2 3.0e-97 352.8
Hepe09g1602 . 113 431 Core Cell Cycle Gene Families AT5G10270 51.3 3.0e-97 352.8
Hepe01g0154 . 148 464 Core Cell Cycle Gene Families AT5G10270 52.4 8.9e-97 351.3
Hepe05g1484 . 103 419 Core Cell Cycle Gene Families AT5G10270 52.3 2.0e-96 350.1
Hepe07g2089 . 95 411 Core Cell Cycle Gene Families AT5G10270 52.9 2.2e-95 346.7
Hepe08g2381 . 101 419 Core Cell Cycle Gene Families AT5G10270 51.0 8.3e-95 344.7
Hepe08g0545 . 143 459 Core Cell Cycle Gene Families AT5G10270 51.8 7.0e-94 341.7
Hepe07g2488 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.7 6.6e-92 335.1
Hepe10g0088 . 404 642 Core Cell Cycle Gene Families AT5G10270 53.5 2.1e-74 276.9
Hepe08g0036 . 436 888 Core Cell Cycle Gene Families AT5G64960 73.4 7.1e-178 620.5
Hepe07g1446 . 141 595 Core Cell Cycle Gene Families AT5G64960 70.9 1.8e-176 615.9
Hepe01g0154 . 202 464 Core Cell Cycle Gene Families AT5G64960 53.6 1.3e-81 300.8
Hepe07g1035 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Hepe06g0383 . 194 458 Core Cell Cycle Gene Families AT5G64960 54.6 2.8e-81 299.7
Hepe08g0544 . 176 440 Core Cell Cycle Gene Families AT5G64960 52.5 1.1e-80 297.7
Hepe09g1602 . 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 1.8e-80 297.0
Hepe07g2089 . 149 411 Core Cell Cycle Gene Families AT5G64960 52.9 4.0e-80 295.8
Hepe05g1484 . 157 419 Core Cell Cycle Gene Families AT5G64960 51.4 6.9e-80 295.0
Hepe08g0545 . 197 459 Core Cell Cycle Gene Families AT5G64960 52.5 2.6e-79 293.1
Hepe09g0370 . 8 432 Core Cell Cycle Gene Families AT1G73690 71.5 1.2e-168 589.7
Hepe09g0370 . 12 360 Core Cell Cycle Gene Families AT1G66750 72.9 1.5e-151 532.7
Hepe09g0370 . 8 433 Core Cell Cycle Gene Families AT1G18040 71.4 2.3e-169 592.0
Hepe04g0241 . 30 489 Core Cell Cycle Gene Families AT5G63610 77.3 3.3e-202 701.4
Hepe08g2602 . 1 478 Core Cell Cycle Gene Families AT4G28980 60.5 1.7e-166 582.8
Hepe02g2221 . 5 494 Core Cell Cycle Gene Families AT1G44110 59.7 2.4e-149 525.8
Hepe03g1583 . 226 492 Core Cell Cycle Gene Families AT1G44110 56.9 5.3e-88 322.0
Hepe01g2047 . 208 474 Core Cell Cycle Gene Families AT1G44110 56.2 4.9e-86 315.5
Hepe01g1808 . 204 483 Core Cell Cycle Gene Families AT1G44110 52.5 8.7e-83 304.7
Hepe03g1583 . 225 504 Core Cell Cycle Gene Families AT1G77390 51.6 4.7e-78 288.9
Hepe01g2047 . 208 474 Core Cell Cycle Gene Families AT1G77390 52.4 3.4e-76 282.7
Hepe01g1808 . 209 481 Core Cell Cycle Gene Families AT1G77390 52.0 1.9e-74 276.9
Hepe10g0294 . 170 427 Core Cell Cycle Gene Families AT1G77390 50.4 4.9e-67 252.3
Hepe01g2047 . 16 486 Core Cell Cycle Gene Families AT5G25380 52.8 3.6e-118 422.2
Hepe10g0294 . 9 443 Core Cell Cycle Gene Families AT5G25380 51.4 2.8e-102 369.4
Hepe03g1583 . 224 504 Core Cell Cycle Gene Families AT5G25380 63.7 2.9e-99 359.4
Hepe02g2221 . 199 487 Core Cell Cycle Gene Families AT5G25380 52.6 1.1e-82 304.3
Hepe01g1808 . 208 476 Core Cell Cycle Gene Families AT5G25380 52.4 4.9e-75 278.9
Hepe02g0630 . 116 340 Core Cell Cycle Gene Families AT5G25380 54.4 3.0e-64 243.0
Hepe01g2047 . 72 424 Core Cell Cycle Gene Families AT5G11300 54.7 2.9e-93 339.3
Hepe10g0294 . 58 381 Core Cell Cycle Gene Families AT5G11300 54.8 3.0e-82 302.8
Hepe02g2221 . 213 432 Core Cell Cycle Gene Families AT5G11300 56.4 4.2e-68 255.8
Hepe01g1808 . 204 420 Core Cell Cycle Gene Families AT5G11300 55.8 3.4e-62 236.1
Hepe08g1310 . 92 314 Core Cell Cycle Gene Families AT5G11300 51.1 8.4e-61 231.5
Hepe08g1309 . 208 429 Core Cell Cycle Gene Families AT5G11300 50.9 3.2e-60 229.6
Hepe02g0630 . 116 282 Core Cell Cycle Gene Families AT5G11300 54.8 8.1e-48 188.3
Hepe03g1583 . 158 504 Core Cell Cycle Gene Families AT1G15570 61.2 2.1e-118 422.9
Hepe02g2221 . 214 491 Core Cell Cycle Gene Families AT1G15570 53.6 5.1e-80 295.4
Hepe03g1583 . 4 504 Core Cell Cycle Gene Families AT1G80370 50.1 7.5e-119 424.5
Hepe01g2047 . 17 486 Core Cell Cycle Gene Families AT1G80370 51.2 4.6e-108 388.7
Hepe02g2221 . 214 479 Core Cell Cycle Gene Families AT1G80370 56.8 2.8e-81 299.7
Hepe01g1808 . 204 481 Core Cell Cycle Gene Families AT1G80370 52.9 2.9e-78 289.7
Hepe08g1309 . 208 486 Core Cell Cycle Gene Families AT1G80370 50.9 2.8e-73 273.1
Hepe08g1310 . 92 370 Core Cell Cycle Gene Families AT1G80370 50.9 1.4e-72 270.8
Hepe08g1309 . 119 488 Core Cell Cycle Gene Families AT5G43080 56.1 4.0e-112 401.7
Hepe01g1808 . 115 486 Core Cell Cycle Gene Families AT5G43080 55.2 2.8e-110 395.6
Hepe08g1310 . 3 372 Core Cell Cycle Gene Families AT5G43080 56.1 4.9e-110 394.8
Hepe08g1314 . 3 369 Core Cell Cycle Gene Families AT5G43080 54.4 3.3e-106 382.1
Hepe02g2221 . 215 494 Core Cell Cycle Gene Families AT5G43080 52.1 3.1e-80 295.8
Hepe01g2047 . 210 476 Core Cell Cycle Gene Families AT5G43080 52.8 4.6e-76 282.0
Hepe03g1583 . 227 497 Core Cell Cycle Gene Families AT5G43080 52.0 2.3e-75 279.6
Hepe10g0294 . 167 445 Core Cell Cycle Gene Families AT5G43080 50.7 1.9e-74 276.6
Hepe08g1310 . 1 372 Core Cell Cycle Gene Families AT1G47210 58.4 6.5e-121 431.0
Hepe08g1309 . 117 488 Core Cell Cycle Gene Families AT1G47210 57.6 8.5e-121 430.6
Hepe08g1314 . 1 369 Core Cell Cycle Gene Families AT1G47210 56.8 1.5e-117 419.9
Hepe01g1808 . 114 486 Core Cell Cycle Gene Families AT1G47210 54.3 9.4e-112 400.6
Hepe03g1583 . 227 504 Core Cell Cycle Gene Families AT1G47210 51.1 2.2e-76 283.1
Hepe01g2047 . 210 476 Core Cell Cycle Gene Families AT1G47210 50.9 4.6e-74 275.4
Hepe10g0294 . 167 433 Core Cell Cycle Gene Families AT1G47210 50.9 9.5e-72 267.7
Hepe01g1808 . 204 484 Core Cell Cycle Gene Families AT1G47220 57.7 2.5e-92 335.9
Hepe08g1310 . 92 372 Core Cell Cycle Gene Families AT1G47220 58.7 3.3e-92 335.5
Hepe08g1309 . 180 488 Core Cell Cycle Gene Families AT1G47220 53.4 2.8e-91 332.4
Hepe08g1314 . 92 369 Core Cell Cycle Gene Families AT1G47220 57.7 1.3e-88 323.6
Hepe10g0294 . 167 433 Core Cell Cycle Gene Families AT1G47220 50.6 5.6e-68 255.0
Hepe01g1808 . 114 486 Core Cell Cycle Gene Families AT1G47230 56.4 1.4e-115 413.3
Hepe08g1309 . 117 488 Core Cell Cycle Gene Families AT1G47230 56.6 2.4e-115 412.5
Hepe08g1310 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.0 5.9e-114 407.9
Hepe08g1314 . 1 369 Core Cell Cycle Gene Families AT1G47230 55.2 1.5e-109 393.3
Hepe02g2221 . 216 496 Core Cell Cycle Gene Families AT1G47230 51.4 5.2e-78 288.5
Hepe03g1583 . 229 504 Core Cell Cycle Gene Families AT1G47230 50.9 2.3e-73 273.1
Hepe04g0519 . 1 447 Core Cell Cycle Gene Families AT4G37490 54.5 1.5e-113 406.8
Hepe04g0519 . 1 344 Core Cell Cycle Gene Families AT5G06150 54.5 1.7e-83 306.6
Hepe04g0519 . 1 404 Core Cell Cycle Gene Families AT3G11520 56.1 8.0e-106 380.9
Hepe08g0180 . 722 1063 Core Cell Cycle Gene Families AT3G11520 51.6 2.9e-84 309.3
Hepe04g1666 . 174 399 Core Cell Cycle Gene Families AT3G11520 51.8 1.7e-60 230.3
Hepe08g0180 . 708 1102 Core Cell Cycle Gene Families AT2G26760 52.4 1.2e-104 377.1
Hepe04g1666 . 29 442 Core Cell Cycle Gene Families AT2G17620 60.1 5.9e-126 448.0
Hepe01g2338 . 37 441 Core Cell Cycle Gene Families AT2G17620 52.7 2.0e-105 379.8
Hepe04g1666 . 29 399 Core Cell Cycle Gene Families AT4G35620 56.6 1.7e-100 363.2
Hepe01g2338 . 37 396 Core Cell Cycle Gene Families AT4G35620 51.6 1.7e-84 310.1
Hepe08g0180 . 838 1063 Core Cell Cycle Gene Families AT4G35620 51.1 3.1e-54 209.5
Hepe01g2338 . 1 439 Core Cell Cycle Gene Families AT1G20610 62.7 4.5e-142 501.5
Hepe04g1666 . 1 442 Core Cell Cycle Gene Families AT1G20610 54.0 1.6e-118 423.3
Hepe01g2338 . 1 336 Core Cell Cycle Gene Families AT1G76310 63.4 4.6e-105 378.3
Hepe04g1666 . 1 339 Core Cell Cycle Gene Families AT1G76310 52.0 7.3e-79 291.2
Hepe04g0519 . 175 340 Core Cell Cycle Gene Families AT1G76310 52.9 1.3e-40 164.1
Hepe08g0180 . 836 1004 Core Cell Cycle Gene Families AT1G76310 52.6 1.3e-40 164.1
Hepe08g1610 . 1 329 Core Cell Cycle Gene Families AT1G70210 63.5 2.0e-108 389.4
Hepe10g1669 . 1 305 Core Cell Cycle Gene Families AT1G70210 63.9 9.8e-100 360.5
Hepe07g0403 . 35 233 Core Cell Cycle Gene Families AT1G70210 51.0 2.5e-50 196.4
Hepe04g1407 . 41 312 Core Cell Cycle Gene Families AT2G22490 56.1 1.5e-82 303.5
Hepe07g0449 . 1 346 Core Cell Cycle Gene Families AT4G34160 53.7 5.3e-78 288.5
Hepe04g1407 . 34 258 Core Cell Cycle Gene Families AT5G65420 57.2 1.0e-67 253.8
Hepe10g0446 . 70 270 Core Cell Cycle Gene Families AT5G65420 55.0 7.2e-61 231.1
Hepe04g1407 . 39 216 Core Cell Cycle Gene Families AT5G10440 57.5 2.3e-52 202.6
Hepe10g0446 . 65 244 Core Cell Cycle Gene Families AT5G10440 52.2 7.3e-51 197.6
Hepe04g1212 . 1 277 Core Cell Cycle Gene Families AT5G27620 65.7 2.4e-102 369.0
Hepe10g0919 . 1 87 Core Cell Cycle Gene Families AT2G27960 93.1 1.2e-44 175.6
Hepe08g0936 . 1 86 Core Cell Cycle Gene Families AT2G27960 89.5 2.4e-42 167.9
Hepe10g0919 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.4e-39 158.7
Hepe08g0936 . 1 76 Core Cell Cycle Gene Families AT2G27970 90.8 9.1e-39 156.0
Hepe01g0961 . 24 1010 Core Cell Cycle Gene Families AT3G12280 74.3 0.0e+00 1420.2
Hepe01g0960 . 5 1022 Core Cell Cycle Gene Families AT3G12280 72.3 0.0e+00 1410.2
Hepe03g1916 . 2 489 Core Cell Cycle Gene Families AT1G02970 60.0 4.3e-160 561.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001075 3 10 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 4 2 2 2 2 3 3 1 81