Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1314 ATGGCTGAGACAGATTACTGTGTCCGTATTACTCGCGCTTCTAACAAGCGAGCTGCGACGGCCGCCATGCCCGAGGGTCAATCCGCCAATAAAAAGCGTGTGGTTCTCGGATTGCTTTCTAACATTCAGAATGTTACTCGCTCACTCCCACAGAAGAGGAGGGCAAAATCCCAGATTACCAAATGCAAACCCAAGAGGAGAACTAAGATTACTGCTGCTCCAACGATCAAGGCGACTGTTGTTGTTGAAGATTACAATGATCCCAACTTAACTGTTGATGATATTCTGGACGACCCAGAAATGAAAAACCCTTATTCCTCCGATATTTATACTTATCTTCGTAAAATGGAGGCGGAACCGAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATCTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTTGCTGAGGAATACAAACTCGGCTCGGATTCTCTGTATCTGTCCATCTCTTACCTCGATAGGTACCTATCAATGAACATCCTCAATAGGCAAAGACTTCAATTATTGGGGGTTTCGGCAATGCTTATTGCCTCGAAGTATGAAGAGATCACTCCTCCAAACGTGGAGGATTTCTGTTACATAACAGAGAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATACTCAAGTCTTTGAACTTTGAGATGGGAAATCCTACTGCCAAGACGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAGTACCAAATCTGCAGTTGGAATTTCTGGGTTGTTACCTTGCTGAGCTTAGCCTATTGGATTATAATTTTGTCAAGTTCTTGCCTTCTTTGATTGCTTCATCAGTTGTATTTCTTGCAAAATTTATCATCCAGCCAAAGCTGCATCCTTGGGGTTCAAACTTGCAAAAACACACAGGCTACAAGCCAGCTGATCTGAGGCCATGTGTCCTTCTCTTACATGATTTGTATATGGCCAGAAGAGGGGGATCTCTGATTGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTGGCAATGATGCCTTCACCCCCTCAGATACTGTTTTCGTACTTCGAAGAAGCTTAG 1113 42.95 MAETDYCVRITRASNKRAATAAMPEGQSANKKRVVLGLLSNIQNVTRSLPQKRRAKSQITKCKPKRRTKITAAPTIKATVVVEDYNDPNLTVDDILDDPEMKNPYSSDIYTYLRKMEAEPKRRPIPNYIEKIQTDLSANMRGVLVDWMVEVAEEYKLGSDSLYLSISYLDRYLSMNILNRQRLQLLGVSAMLIASKYEEITPPNVEDFCYITENTYRRDEVVKMEADILKSLNFEMGNPTAKTRFTNIAQEDFKVPNLQLEFLGCYLAELSLLDYNFVKFLPSLIASSVVFLAKFIIQPKLHPWGSNLQKHTGYKPADLRPCVLLLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPQILFSYFEEA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14928233 14930027 + Hsped.08g13140.1 Hepe08g1314 577286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1314 370 PIRSF Cyclin_A_B_D_E 3 369 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Hepe08g1314 370 PANTHER CYCLINS 83 346 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe08g1314 370 ProSitePatterns Cyclins signature. 141 172 IPR048258 -
Hepe08g1314 370 SUPERFAMILY Cyclin-like 245 360 IPR036915 -
Hepe08g1314 370 Gene3D - 108 355 - -
Hepe08g1314 370 Pfam Cyclin, N-terminal domain 108 236 IPR006671 -
Hepe08g1314 370 SMART cyclin_7 146 230 IPR013763 -
Hepe08g1314 370 SMART cyclin_7 244 328 IPR013763 -
Hepe08g1314 370 FunFam Mitotic cyclin 6 124 224 - -
Hepe08g1314 370 SUPERFAMILY Cyclin-like 97 236 IPR036915 -
Hepe08g1314 370 Gene3D - 124 237 - -
Hepe08g1314 370 Pfam Cyclin, C-terminal domain 244 358 IPR004367 -
Hepe08g1314 370 FunFam Cyclin A1 226 355 - -
Hepe08g1314 370 SMART Cyclin_C_2 239 359 IPR004367 -
Hepe08g1314 370 CDD CYCLIN_AtCycA-like_rpt2 239 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1309 Hepe-Chr8:14807717 Hepe08g1314 Hepe-Chr8:14928233 5.48e-247 dispersed
Hepe08g1314 Hepe-Chr8:14928233 Hepe10g0294 Hepe-Chr10:3124022 3.87e-78 dispersed
Hepe08g1310 Hepe-Chr8:14851347 Hepe08g1314 Hepe-Chr8:14928233 4.73e-248 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1314 K06627 - csv:101206145 619.772