Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g1314 | ATGGCTGAGACAGATTACTGTGTCCGTATTACTCGCGCTTCTAACAAGCGAGCTGCGACGGCCGCCATGCCCGAGGGTCAATCCGCCAATAAAAAGCGTGTGGTTCTCGGATTGCTTTCTAACATTCAGAATGTTACTCGCTCACTCCCACAGAAGAGGAGGGCAAAATCCCAGATTACCAAATGCAAACCCAAGAGGAGAACTAAGATTACTGCTGCTCCAACGATCAAGGCGACTGTTGTTGTTGAAGATTACAATGATCCCAACTTAACTGTTGATGATATTCTGGACGACCCAGAAATGAAAAACCCTTATTCCTCCGATATTTATACTTATCTTCGTAAAATGGAGGCGGAACCGAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATCTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTTGCTGAGGAATACAAACTCGGCTCGGATTCTCTGTATCTGTCCATCTCTTACCTCGATAGGTACCTATCAATGAACATCCTCAATAGGCAAAGACTTCAATTATTGGGGGTTTCGGCAATGCTTATTGCCTCGAAGTATGAAGAGATCACTCCTCCAAACGTGGAGGATTTCTGTTACATAACAGAGAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATACTCAAGTCTTTGAACTTTGAGATGGGAAATCCTACTGCCAAGACGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAGTACCAAATCTGCAGTTGGAATTTCTGGGTTGTTACCTTGCTGAGCTTAGCCTATTGGATTATAATTTTGTCAAGTTCTTGCCTTCTTTGATTGCTTCATCAGTTGTATTTCTTGCAAAATTTATCATCCAGCCAAAGCTGCATCCTTGGGGTTCAAACTTGCAAAAACACACAGGCTACAAGCCAGCTGATCTGAGGCCATGTGTCCTTCTCTTACATGATTTGTATATGGCCAGAAGAGGGGGATCTCTGATTGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTGGCAATGATGCCTTCACCCCCTCAGATACTGTTTTCGTACTTCGAAGAAGCTTAG | 1113 | 42.95 | MAETDYCVRITRASNKRAATAAMPEGQSANKKRVVLGLLSNIQNVTRSLPQKRRAKSQITKCKPKRRTKITAAPTIKATVVVEDYNDPNLTVDDILDDPEMKNPYSSDIYTYLRKMEAEPKRRPIPNYIEKIQTDLSANMRGVLVDWMVEVAEEYKLGSDSLYLSISYLDRYLSMNILNRQRLQLLGVSAMLIASKYEEITPPNVEDFCYITENTYRRDEVVKMEADILKSLNFEMGNPTAKTRFTNIAQEDFKVPNLQLEFLGCYLAELSLLDYNFVKFLPSLIASSVVFLAKFIIQPKLHPWGSNLQKHTGYKPADLRPCVLLLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPQILFSYFEEA | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 14928233 | 14930027 | + | Hsped.08g13140.1 | Hepe08g1314 | 577286 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g1314 | 370 | PIRSF | Cyclin_A_B_D_E | 3 | 369 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Hepe08g1314 | 370 | PANTHER | CYCLINS | 83 | 346 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Hepe08g1314 | 370 | ProSitePatterns | Cyclins signature. | 141 | 172 | IPR048258 | - | |
Hepe08g1314 | 370 | SUPERFAMILY | Cyclin-like | 245 | 360 | IPR036915 | - | |
Hepe08g1314 | 370 | Gene3D | - | 108 | 355 | - | - | |
Hepe08g1314 | 370 | Pfam | Cyclin, N-terminal domain | 108 | 236 | IPR006671 | - | |
Hepe08g1314 | 370 | SMART | cyclin_7 | 146 | 230 | IPR013763 | - | |
Hepe08g1314 | 370 | SMART | cyclin_7 | 244 | 328 | IPR013763 | - | |
Hepe08g1314 | 370 | FunFam | Mitotic cyclin 6 | 124 | 224 | - | - | |
Hepe08g1314 | 370 | SUPERFAMILY | Cyclin-like | 97 | 236 | IPR036915 | - | |
Hepe08g1314 | 370 | Gene3D | - | 124 | 237 | - | - | |
Hepe08g1314 | 370 | Pfam | Cyclin, C-terminal domain | 244 | 358 | IPR004367 | - | |
Hepe08g1314 | 370 | FunFam | Cyclin A1 | 226 | 355 | - | - | |
Hepe08g1314 | 370 | SMART | Cyclin_C_2 | 239 | 359 | IPR004367 | - | |
Hepe08g1314 | 370 | CDD | CYCLIN_AtCycA-like_rpt2 | 239 | 350 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe08g1309 | Hepe-Chr8:14807717 | Hepe08g1314 | Hepe-Chr8:14928233 | 5.48e-247 | dispersed | |
Hepe08g1314 | Hepe-Chr8:14928233 | Hepe10g0294 | Hepe-Chr10:3124022 | 3.87e-78 | dispersed | |
Hepe08g1310 | Hepe-Chr8:14851347 | Hepe08g1314 | Hepe-Chr8:14928233 | 4.73e-248 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g1314 | K06627 | - | csv:101206145 | 619.772 |