Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1345 ATGCCTATGTATCACCCCTCTCCAAAGCTCGGCACCCAGATTCTAGATCTGGAAACCGTCGTCAAAGATGGGATTCTCGGTGGTGTTCATGGCGGCCAGAAATTGGATCTGAAGGAGATGATTCAGGATTTGGAATCGTTCATTGAGGTTCCATCGGTGTTCATCTGCCCGATTTCGCTCGAGCCGATGCAAGATCCGGTGACCCTTTGCTCCGGCCAGACCTACGAGCGGGCTAACATTCTCAAATGGTTCTCTTTAGGCCATTTAACTTGCCCCACCACAATGCAAGAGCTCTGGGACGATTCCGTCACGCCGAATCGGACCCTTTTCCAATTGATTCACACATGGTTTTCTCAAAAGTATTTAGCGTTGAAGAAGAGATCGGAGGATGTACAGGGGAGGGTTTTGGAGCTTTTGGATAAATTGAAGAAGGTGAAAGGTCAAGCTAGGGTACAGTTGCTGAAAGATCTCCGACATGTCGTCACGGCGCATTCCTCCGCCAAGAAGATGGTCGTCGACAACGGCGGCGTCGCGCTAATCTCTGCTCTTTTGGGTTCTTTCACTTCCCACGCGGTGGGTTCCGAAGCCGTGGGGATTCTAGTGAATTTGGATCTGGATTCGGAGTTGAAGAAGAATCTGATTCAACCCACGAGAATTTCCCTAATTGCGGATATATTAAACGAAGGATCCATCGAAACGAAGATTAATTGCACGAAATTCATCAAGATGTTGATGGAGGGTGATGATTTAAGAACAGAGAGCGTTTCGAGTTTGGGTTTATTGGTGGGTTTGTTGAGAATGGTGAAGGATCGGAGACACCCAATTGGAGTAACCGCCGGACTAAGTTTACTCCGATTGCTCTGTTCGAACGAACCAATCAGAAAACAACTCGTCAGCATCGGCGCCGTCGCGAAACTCGGCGGCGTTCTCTCCGGTTTGAACGCCGATTGCTTGGAATCTGCACTTTATATTCTCGAGGTTTTGTCGTCGCTTCCAGAAGGGAGATTAGCGTTGAAGGATTGTGAAGATACGATTAGGAATTTGGTGAAATTGTTGATGAAAGTGTCGGAGATTTGTACTCAATTTGCATTGTCGATTTTGTGGGCGGTTTTCAAATTAGCGCCGGAGGAATGTTCGGTGCTGGCGGTGGAGGCGGGATTGGCGGCGAAGTTGCTGCTTGTGATTCAAAGTGGATGCAATAAAGAACTGAAACAGAGATCTTCTGAGCTATTGAAATTGTGTAGTTTGAATTACCCAGATTCTATGTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1305 46.82 MPMYHPSPKLGTQILDLETVVKDGILGGVHGGQKLDLKEMIQDLESFIEVPSVFICPISLEPMQDPVTLCSGQTYERANILKWFSLGHLTCPTTMQELWDDSVTPNRTLFQLIHTWFSQKYLALKKRSEDVQGRVLELLDKLKKVKGQARVQLLKDLRHVVTAHSSAKKMVVDNGGVALISALLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLMEGDDLRTESVSSLGLLVGLLRMVKDRRHPIGVTAGLSLLRLLCSNEPIRKQLVSIGAVAKLGGVLSGLNADCLESALYILEVLSSLPEGRLALKDCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECSVLAVEAGLAAKLLLVIQSGCNKELKQRSSELLKLCSLNYPDSMFISKCKLTRTIQ 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15482837 15484188 + Hsped.08g13450.1 Hepe08g1345 577317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1345 434 CDD RING-Ubox_PUB 51 103 IPR045210 -
Hepe08g1345 434 Gene3D - 123 431 IPR011989 -
Hepe08g1345 434 PANTHER WDSAM1 PROTEIN 48 427 IPR045185 GO:0061630(InterPro)
Hepe08g1345 434 Pfam U-box domain 50 120 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g1345 434 SUPERFAMILY RING/U-box 46 120 - -
Hepe08g1345 434 SMART Ubox_2 53 116 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g1345 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 122 IPR013083 -
Hepe08g1345 434 ProSiteProfiles U-box domain profile. 49 123 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g1345 434 SUPERFAMILY ARM repeat 142 251 IPR016024 -
Hepe08g1345 434 SUPERFAMILY ARM repeat 220 422 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1345 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1345 Hepe-Chr8:15482837 Hepe08g1513 Hepe-Chr8:19068672 1.18e-10 dispersed
Hepe09g1058 Hepe-Chr9:11285569 Hepe08g1345 Hepe-Chr8:15482837 2.96e-09 transposed
Hepe01g1842 Hepe-Chr1:83339379 Hepe08g1345 Hepe-Chr8:15482837 1.45e-204 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g622 . . . . . . . . Cmo05g00134 Cmo12g00545 Cma01g01775 Cma09g00301 Car01g01385 Car12g00549 Sed11g0913 Cpe06g00211 Cpe07g00525 Bhi04g00447 Tan02g1715 Cmetu03g2084 . Hepe08g1345 . Lcy13g2147 Cla08g01635 Cam08g2137 Cec08g1725 Cco08g1844 Clacu08g1825 . Cre08g1608 . . . . Lsi04g01467 Csa04g02494 . Cme03g02117 . . . . . . . . Sed01g2733 Cmo01g01834 Cmo09g00300 Cma12g00605 Cma05g00129 Car05g00111 Car09g00253 Cpe11g00111 Cpe02g00230 Bhi09g03207 Tan01g4675 Cmetu07g0012 . Hepe01g1842 Mch11g0376 . . . . . . . . Lsi08g01540 Csa02g01879 Chy07g00203 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001278 2 3 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 2 1 74