Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1345 ATGCCTATGTATCACCCCTCTCCAAAGCTCGGCACCCAGATTCTAGATCTGGAAACCGTCGTCAAAGATGGGATTCTCGGTGGTGTTCATGGCGGCCAGAAATTGGATCTGAAGGAGATGATTCAGGATTTGGAATCGTTCATTGAGGTTCCATCGGTGTTCATCTGCCCGATTTCGCTCGAGCCGATGCAAGATCCGGTGACCCTTTGCTCCGGCCAGACCTACGAGCGGGCTAACATTCTCAAATGGTTCTCTTTAGGCCATTTAACTTGCCCCACCACAATGCAAGAGCTCTGGGACGATTCCGTCACGCCGAATCGGACCCTTTTCCAATTGATTCACACATGGTTTTCTCAAAAGTATTTAGCGTTGAAGAAGAGATCGGAGGATGTACAGGGGAGGGTTTTGGAGCTTTTGGATAAATTGAAGAAGGTGAAAGGTCAAGCTAGGGTACAGTTGCTGAAAGATCTCCGACATGTCGTCACGGCGCATTCCTCCGCCAAGAAGATGGTCGTCGACAACGGCGGCGTCGCGCTAATCTCTGCTCTTTTGGGTTCTTTCACTTCCCACGCGGTGGGTTCCGAAGCCGTGGGGATTCTAGTGAATTTGGATCTGGATTCGGAGTTGAAGAAGAATCTGATTCAACCCACGAGAATTTCCCTAATTGCGGATATATTAAACGAAGGATCCATCGAAACGAAGATTAATTGCACGAAATTCATCAAGATGTTGATGGAGGGTGATGATTTAAGAACAGAGAGCGTTTCGAGTTTGGGTTTATTGGTGGGTTTGTTGAGAATGGTGAAGGATCGGAGACACCCAATTGGAGTAACCGCCGGACTAAGTTTACTCCGATTGCTCTGTTCGAACGAACCAATCAGAAAACAACTCGTCAGCATCGGCGCCGTCGCGAAACTCGGCGGCGTTCTCTCCGGTTTGAACGCCGATTGCTTGGAATCTGCACTTTATATTCTCGAGGTTTTGTCGTCGCTTCCAGAAGGGAGATTAGCGTTGAAGGATTGTGAAGATACGATTAGGAATTTGGTGAAATTGTTGATGAAAGTGTCGGAGATTTGTACTCAATTTGCATTGTCGATTTTGTGGGCGGTTTTCAAATTAGCGCCGGAGGAATGTTCGGTGCTGGCGGTGGAGGCGGGATTGGCGGCGAAGTTGCTGCTTGTGATTCAAAGTGGATGCAATAAAGAACTGAAACAGAGATCTTCTGAGCTATTGAAATTGTGTAGTTTGAATTACCCAGATTCTATGTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1305 46.82 MPMYHPSPKLGTQILDLETVVKDGILGGVHGGQKLDLKEMIQDLESFIEVPSVFICPISLEPMQDPVTLCSGQTYERANILKWFSLGHLTCPTTMQELWDDSVTPNRTLFQLIHTWFSQKYLALKKRSEDVQGRVLELLDKLKKVKGQARVQLLKDLRHVVTAHSSAKKMVVDNGGVALISALLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLMEGDDLRTESVSSLGLLVGLLRMVKDRRHPIGVTAGLSLLRLLCSNEPIRKQLVSIGAVAKLGGVLSGLNADCLESALYILEVLSSLPEGRLALKDCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECSVLAVEAGLAAKLLLVIQSGCNKELKQRSSELLKLCSLNYPDSMFISKCKLTRTIQ 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15482837 15484188 + Hsped.08g13450.1 Hepe08g1345 577317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1345 434 CDD RING-Ubox_PUB 51 103 IPR045210 -
Hepe08g1345 434 Gene3D - 123 431 IPR011989 -
Hepe08g1345 434 PANTHER WDSAM1 PROTEIN 48 427 IPR045185 GO:0061630(InterPro)
Hepe08g1345 434 Pfam U-box domain 50 120 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g1345 434 SUPERFAMILY RING/U-box 46 120 - -
Hepe08g1345 434 SMART Ubox_2 53 116 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g1345 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 122 IPR013083 -
Hepe08g1345 434 ProSiteProfiles U-box domain profile. 49 123 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g1345 434 SUPERFAMILY ARM repeat 142 251 IPR016024 -
Hepe08g1345 434 SUPERFAMILY ARM repeat 220 422 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1345 Hepe-Chr8:15482837 Hepe08g1513 Hepe-Chr8:19068672 1.18e-10 dispersed
Hepe09g1058 Hepe-Chr9:11285569 Hepe08g1345 Hepe-Chr8:15482837 2.96e-09 transposed
Hepe01g1842 Hepe-Chr1:83339379 Hepe08g1345 Hepe-Chr8:15482837 1.45e-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1345 - - - 0.0