Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g1356 | ATGGGTGGTTCTGGTTCTGGTTCTGGTTCTGGCATTGAATATGAAATCAACTGTTCTTATGGAATTAGCCCTCAGCCATTGTTTGAAAATGCTTCAGAAATGACATTGAGTTCAGTGTCCATATTCAGAAATGATCCTTCAAGTTTGAGTTTTGATATGTTTGGAAGTGAGAACTTCTCAGAAATGGTGGGTTCTTTTGGCTTTGTAACTGAAGGTCACCAGAGCCAGATCGCTAATATTAAGTGTCCATTTAGTTATGTGCCAAATCTGGATGCAGGGGGGAGTACTGAAGAAGAAAGGGTCTCGATGAAGAACGATGTGAAGGCTCGGCTCGATTGCGCTAACGAAAAGAGAAGAAAATTGGCTCTTGGTGCCAATTCTTCCACCCCAAATAAGAATGTTGAAGATAACTTGAATGTGGAACCAATTGAGATTGTATCTGAGATCCTTAAAAAAGATGACAAAACTCTGATAGTTAAGCATAGAATGTGTGCAAATTTGAACACCAAATCAGATGGCAAACAAGCTAATGGAGGCTGTCAAAGTGTACAAGCCCCTAAGGAGAATTATATTCATGTTCGAGCCAGACGGGGCCGAGCTACTAATAGCCATAGCCTCGCCGAAAGGGTTAGGAGGGAAAAGATCAGTGAAAGAATGAAGTTGCTGCAAGAGATTGTTCCTGGATGCAATCAGATGACCGGGAAAACCGTGGTGCTCGATGAAATTATCAATTATGTACAATCACTACAACAACAGGTCGAGTTTCTATCGATGAAACTCGCCAATGTCGGTCCAGAATCAAACTTGGATACAGAACAGATTCTGCTCACAAATGTAAGCTCTAAGGTTATCTTGTATGCTTCAGAACTTGATCTGTCTGTTTTAGCAATGCTTATCTGTATACAATGA | 909 | 40.92 | MGGSGSGSGSGIEYEINCSYGISPQPLFENASEMTLSSVSIFRNDPSSLSFDMFGSENFSEMVGSFGFVTEGHQSQIANIKCPFSYVPNLDAGGSTEEERVSMKNDVKARLDCANEKRRKLALGANSSTPNKNVEDNLNVEPIEIVSEILKKDDKTLIVKHRMCANLNTKSDGKQANGGCQSVQAPKENYIHVRARRGRATNSHSLAERVRREKISERMKLLQEIVPGCNQMTGKTVVLDEIINYVQSLQQQVEFLSMKLANVGPESNLDTEQILLTNVSSKVILYASELDLSVLAMLICIQ | 302 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 15782176 | 15783505 | + | Hsped.08g13560.1 | Hepe08g1356 | 577328 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g1356 | 302 | CDD | bHLH_AtBPE_like | 189 | 274 | - | - | |
Hepe08g1356 | 302 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 199 | 249 | IPR011598 | GO:0046983(InterPro) | |
Hepe08g1356 | 302 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 95 | 277 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Hepe08g1356 | 302 | FunFam | Basic helix-loop-helix transcription factor | 196 | 268 | - | - | |
Hepe08g1356 | 302 | SMART | finulus | 205 | 255 | IPR011598 | GO:0046983(InterPro) | |
Hepe08g1356 | 302 | Gene3D | - | 196 | 270 | IPR036638 | GO:0046983(InterPro) | |
Hepe08g1356 | 302 | Pfam | Helix-loop-helix DNA-binding domain | 202 | 250 | IPR011598 | GO:0046983(InterPro) | |
Hepe08g1356 | 302 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 197 | 263 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe08g1356 | Hepe-Chr8:15782176 | Hepe10g1832 | Hepe-Chr10:55051312 | 5.72e-41 | dispersed | |
Hepe01g1851 | Hepe-Chr1:83410454 | Hepe08g1356 | Hepe-Chr8:15782176 | 2.70e-43 | wgd | |
Hepe03g1487 | Hepe-Chr3:71700449 | Hepe08g1356 | Hepe-Chr8:15782176 | 6.86e-07 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56215 | PF00010 | HLH | 2.80E-06 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g1356 | - | - | - | 0.0 |