Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1356 ATGGGTGGTTCTGGTTCTGGTTCTGGTTCTGGCATTGAATATGAAATCAACTGTTCTTATGGAATTAGCCCTCAGCCATTGTTTGAAAATGCTTCAGAAATGACATTGAGTTCAGTGTCCATATTCAGAAATGATCCTTCAAGTTTGAGTTTTGATATGTTTGGAAGTGAGAACTTCTCAGAAATGGTGGGTTCTTTTGGCTTTGTAACTGAAGGTCACCAGAGCCAGATCGCTAATATTAAGTGTCCATTTAGTTATGTGCCAAATCTGGATGCAGGGGGGAGTACTGAAGAAGAAAGGGTCTCGATGAAGAACGATGTGAAGGCTCGGCTCGATTGCGCTAACGAAAAGAGAAGAAAATTGGCTCTTGGTGCCAATTCTTCCACCCCAAATAAGAATGTTGAAGATAACTTGAATGTGGAACCAATTGAGATTGTATCTGAGATCCTTAAAAAAGATGACAAAACTCTGATAGTTAAGCATAGAATGTGTGCAAATTTGAACACCAAATCAGATGGCAAACAAGCTAATGGAGGCTGTCAAAGTGTACAAGCCCCTAAGGAGAATTATATTCATGTTCGAGCCAGACGGGGCCGAGCTACTAATAGCCATAGCCTCGCCGAAAGGGTTAGGAGGGAAAAGATCAGTGAAAGAATGAAGTTGCTGCAAGAGATTGTTCCTGGATGCAATCAGATGACCGGGAAAACCGTGGTGCTCGATGAAATTATCAATTATGTACAATCACTACAACAACAGGTCGAGTTTCTATCGATGAAACTCGCCAATGTCGGTCCAGAATCAAACTTGGATACAGAACAGATTCTGCTCACAAATGTAAGCTCTAAGGTTATCTTGTATGCTTCAGAACTTGATCTGTCTGTTTTAGCAATGCTTATCTGTATACAATGA 909 40.92 MGGSGSGSGSGIEYEINCSYGISPQPLFENASEMTLSSVSIFRNDPSSLSFDMFGSENFSEMVGSFGFVTEGHQSQIANIKCPFSYVPNLDAGGSTEEERVSMKNDVKARLDCANEKRRKLALGANSSTPNKNVEDNLNVEPIEIVSEILKKDDKTLIVKHRMCANLNTKSDGKQANGGCQSVQAPKENYIHVRARRGRATNSHSLAERVRREKISERMKLLQEIVPGCNQMTGKTVVLDEIINYVQSLQQQVEFLSMKLANVGPESNLDTEQILLTNVSSKVILYASELDLSVLAMLICIQ 302
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 15782176 15783505 + Hsped.08g13560.1 Hepe08g1356 577328
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1356 302 CDD bHLH_AtBPE_like 189 274 - -
Hepe08g1356 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 249 IPR011598 GO:0046983(InterPro)
Hepe08g1356 302 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 95 277 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe08g1356 302 FunFam Basic helix-loop-helix transcription factor 196 268 - -
Hepe08g1356 302 SMART finulus 205 255 IPR011598 GO:0046983(InterPro)
Hepe08g1356 302 Gene3D - 196 270 IPR036638 GO:0046983(InterPro)
Hepe08g1356 302 Pfam Helix-loop-helix DNA-binding domain 202 250 IPR011598 GO:0046983(InterPro)
Hepe08g1356 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 263 IPR036638 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1356 Hepe-Chr8:15782176 Hepe10g1832 Hepe-Chr10:55051312 5.72e-41 dispersed
Hepe01g1851 Hepe-Chr1:83410454 Hepe08g1356 Hepe-Chr8:15782176 2.70e-43 wgd
Hepe03g1487 Hepe-Chr3:71700449 Hepe08g1356 Hepe-Chr8:15782176 6.86e-07 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56215 PF00010 HLH 2.80E-06 No_clan Hepe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1356 - - - 0.0