Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1362 ATGGCAATGTTATTGTCTAGCAAAGCTAGCCATGATTCCCATGGCCAGGATTCTTCCTACTTCTTCGGATGGCAAGAGTACGAGAAAAACCCTTATCACCCTACTCGAAACCCCACCGGAATTATCCAAATGGGTCTCGCCGAAAATGAGCTATGTTTCGACTTATTGGAGGAGTGGCTGGCGAAGAATCCAGACGCGTTGGGATTGAGAAGAAATGGAGTGTCTGTGTTTAGAGAATTGGCTCTATTTCAAGACTATCATGGCTTGCCTGCTTTTAAAAAAGTGCTGGTTGAATTGATGGAGGAAATACGAGGAAACAAAGTGAAGTTTGATGTCAATAAATTAGTCCTCACTGCTGGTGCAACTTCTGCCAATGAGATCCTCATGTTTTGTCTTGCCGAACCTGGAGAAGCTTTTCTTGTTCCCACTCCTTATTATCCAGGGTTTGACAGGGACCTAAAATGGCGGCCAGGGGTTCAAATAATTCCAATTCACTGTTCGAGTTCAAACGGTTTCAAAATCACAGCACCCGCCATGGAGGACGCCTTCGAACGAGCCCAAAACCTAAATCTACGAGTCAAAGGGGTTGTAATCACGAACCCATCGAACCCACTTGGCACCACAATGAGCCGCAACGAGCTAAATTCAGTAGTCAACTTCGCCACTGCCAAAGGGATCCACATCGTAAGCGACGAGATATATTCCGCCACCGTTTTCGACCCACCAAATTTCGTAAGCGTAATCGAGGAAAGCCTGAAAGAATCCTCAATCTGGAACCGAATCCACGTGGTTTACAGCCTGTCAAAGGATCTGGGGCTGCCCGGGTTCCGAGTTGGCATGATTTATTCGAACGACACGAAGGTGGTGGCGGCGGCTACGAAGATGTCGAGCTTCGGACTGATGTCGTCGCAGACGCAGTATTTGCTGTCGGAAATGCTGTCGGATCGGAGATTCCGAGGGAATTACATGGAGGCAACGAAGCGGCGGATACGACGGAGGAGAGGGATGCTGGTGGCGGGGCTCCGGAAGGCCGGAATCGGGTGCTTGAAAGGGAATGCGGGTGGTTTGGTTTCTTATTGTTATTGTCACGACTCGTTCCTCCAAATTCTAAATTTATCGTTGATACCAAATTTAGATATCAATAGTTGCCGCCGTCTGTGGGGAACAAATGTTCAAAAGATTAACGACTCAAAACGTGCACAAGAAAGCAGCAGAGAGGAGACCAACGCTAGTACGCCAGTCGTGACACTTCCAAAACAACTAGACGTCCTGATGGAGGACGAGTTGGTGGTCAACTCCTTGGATCCAGACGATACATCAGACTATCGAGGAGAACCATCCGAAAAATTAGAGTTCATCTCGCTGCTGTACGAAAACTTTTTTAAATACAAGAATTACCCGAGGTAA 1407 47.48 MAMLLSSKASHDSHGQDSSYFFGWQEYEKNPYHPTRNPTGIIQMGLAENELCFDLLEEWLAKNPDALGLRRNGVSVFRELALFQDYHGLPAFKKVLVELMEEIRGNKVKFDVNKLVLTAGATSANEILMFCLAEPGEAFLVPTPYYPGFDRDLKWRPGVQIIPIHCSSSNGFKITAPAMEDAFERAQNLNLRVKGVVITNPSNPLGTTMSRNELNSVVNFATAKGIHIVSDEIYSATVFDPPNFVSVIEESLKESSIWNRIHVVYSLSKDLGLPGFRVGMIYSNDTKVVAAATKMSSFGLMSSQTQYLLSEMLSDRRFRGNYMEATKRRIRRRRGMLVAGLRKAGIGCLKGNAGGLVSYCYCHDSFLQILNLSLIPNLDINSCRRLWGTNVQKINDSKRAQESSREETNASTPVVTLPKQLDVLMEDELVVNSLDPDDTSDYRGEPSEKLEFISLLYENFFKYKNYPR 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15896637 15899874 + Hsped.08g13620.1 Hepe08g1362 577334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1362 468 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 266 279 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
Hepe08g1362 468 Gene3D Aspartate Aminotransferase, domain 1 30 355 IPR015422 -
Hepe08g1362 468 Pfam Aminotransferase class I and II 42 359 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Hepe08g1362 468 CDD AAT_like 42 355 - -
Hepe08g1362 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 292 315 - -
Hepe08g1362 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 136 157 - -
Hepe08g1362 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 44 70 - -
Hepe08g1362 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 114 134 - -
Hepe08g1362 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 190 214 - -
Hepe08g1362 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 226 249 - -
Hepe08g1362 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 260 284 - -
Hepe08g1362 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 77 93 - -
Hepe08g1362 468 Gene3D - 64 315 IPR015421 -
Hepe08g1362 468 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 64 315 - -
Hepe08g1362 468 SUPERFAMILY PLP-dependent transferases 9 356 IPR015424 -
Hepe08g1362 468 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 6 386 IPR050478 GO:0006520(PANTHER)|GO:0008483(PANTHER)|GO:0016847(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1362 K01762 - - csv:101213522 557.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0593 Hepe-Chr7:6468984 Hepe08g1362 Hepe-Chr8:15896637 7.75e-177 dispersed
Hepe08g1362 Hepe-Chr8:15896637 Hepe09g0848 Hepe-Chr9:8381723 3.79e-137 dispersed
Hepe04g1348 Hepe-Chr4:69088100 Hepe08g1362 Hepe-Chr8:15896637 4.45e-183 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g599 Blo01g01481 . . . Bpe02g00470 . . Bma01g02225 Cmo05g00121 . . . . . Sed11g0907 . . Bhi04g00467 Tan02g1683 Cmetu03g1555 . Hepe08g1362 . Lcy13g2159 Cla08g01646 Cam08g2149 Cec08g1738 Cco08g1856 Clacu08g1837 . Cre08g1621 Cone4ag1638 . Cone17ag0907 Cone20ag0251 . . . Cme03g02130 . . . . . . . . . . . . Cma05g00118 Car05g00101 . Cpe11g00103 . . . . . . . . . . . . . . . Lsi08g01554 Csa02g01865 Chy03g01621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0059243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1