Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1369 ATGGAAGATCAGTACAATCCTCATGGTGATAACTCTAGGGGAAATTTCTTGTACACTTCAGTCCCCGTTTTGGCTACCAATTCATCTTCTCCTGCGGGCAATTTCGTAATTAGACCCTCTTCTTCAAATGGAGGAGGAGCCTCAATTTTTGGCAATAATATTAATCAAATGGCTGTAAATAATACTACTAGTGGCAGCGGCAGCGGCGGCGGCGGCGGTGGTGATTGTAATTTTCAGCCGTCCGATCAAGAGTACCGACTTGTAAAAGTGGAGCCCAGTGGTTCACAATCTCATCATCATCATCATCATCAACAACAACAACAAGAAGTTCATGATTTTCATTACCATCTAATGAGAGAGTTTCAAATGAGTAGCGGCGGCGGCGGCGGCGGTGGTAGTAATGATGTTGATACCATCAAAGCCAAAATCATTTCTCACTCTCAATTCTCTAATCTCCTCCAAGCTTTCTTGGATTGCCAAAAGGTCGGAGCTCCGCCGGAGGTGGCGGCGAAACTTGCTTCGGTAAGGGAGGAGTTTGAGGAGCGGCGGCGGTCTTCAATGGCGTCTACTGGTGGTTCAAGTGACCCTGAACTTGACCACTTCATGGAAGCTTACTATGGAATGTTGGTGAAGTATAGAGAGGAGTTAACAAAGCCTATTGAAGAAGCTGCTGATTTCATGCAGAGGATTGAATCCCAACTCAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCATCTGCGAGAGAAGAGAAATGCGAAGGAATGGGAGGATCATCGGAGGAGGAGCGAGGGAACGGCGGAGAAGGAGAAAGAGAGGTCGGGGATCAAATCGACCCACGTGCGGAGGAGCGAGAGCTAAAGAATCACTTACTAAAAAAGTACAGTGGATATCTAAGTAGCCTAAAGCAAGAGCTTTCAAAGAAAAAGAAGAAAGGAAAGCTCCCAAAGGACGCAAGACAAGAGCTTGTTCGATGGTGGGAAATGCACAACAAATGGCCATACCCATCGGAGGCAGAGAAGTTGGCGTTGGCAGAATCAACTGGGTTGGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAGCCATCTGAGGATGTGCAGTTTATGGGGATGGAGGGATTTTACCATCCCAATGCTGCTGCTGCTGCTGCTGCTTTTTACTTTGATGGCCATTATATGGCTGATGCCCATTATCGTTTGGCTCCTTAA 1233 46.23 MEDQYNPHGDNSRGNFLYTSVPVLATNSSSPAGNFVIRPSSSNGGGASIFGNNINQMAVNNTTSGSGSGGGGGGDCNFQPSDQEYRLVKVEPSGSQSHHHHHHQQQQQEVHDFHYHLMREFQMSSGGGGGGGSNDVDTIKAKIISHSQFSNLLQAFLDCQKVGAPPEVAAKLASVREEFEERRRSSMASTGGSSDPELDHFMEAYYGMLVKYREELTKPIEEAADFMQRIESQLNTLCNGSFQILASSAREEKCEGMGGSSEEERGNGGEGEREVGDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELVRWWEMHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAAAAFYFDGHYMADAHYRLAP 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16039618 16045335 - Hsped.08g13690.1 Hepe08g1369 577341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1369 410 MobiDBLite consensus disorder prediction 253 282 - -
Hepe08g1369 410 Pfam Homeobox KN domain 327 366 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe08g1369 410 ProSitePatterns 'Homeobox' domain signature. 345 368 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe08g1369 410 ProSiteProfiles ELK domain profile. 287 307 IPR005539 GO:0003677(InterPro)
Hepe08g1369 410 SUPERFAMILY Homeodomain-like 308 380 IPR009057 -
Hepe08g1369 410 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 137 377 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe08g1369 410 ProSiteProfiles 'Homeobox' domain profile. 307 370 IPR001356 GO:0003677(InterPro)
Hepe08g1369 410 SMART KNOX1_2 137 181 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe08g1369 410 MobiDBLite consensus disorder prediction 61 80 - -
Hepe08g1369 410 MobiDBLite consensus disorder prediction 255 282 - -
Hepe08g1369 410 Pfam KNOX2 domain 194 238 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe08g1369 410 Pfam KNOX1 domain 139 180 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe08g1369 410 CDD homeodomain 319 371 IPR001356 GO:0003677(InterPro)
Hepe08g1369 410 SMART ELK_2 197 217 IPR005539 GO:0003677(InterPro)
Hepe08g1369 410 SMART ELK_2 287 308 IPR005539 GO:0003677(InterPro)
Hepe08g1369 410 SMART KNOX2_2 188 239 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe08g1369 410 SMART HOX_1 309 374 IPR001356 GO:0003677(InterPro)
Hepe08g1369 410 Pfam ELK domain 287 308 IPR005539 GO:0003677(InterPro)
Hepe08g1369 410 Gene3D - 304 376 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0249 Hepe-Chr2:2487268 Hepe08g1369 Hepe-Chr8:16039618 7.83e-76 dispersed
Hepe04g1740 Hepe-Chr4:72434067 Hepe08g1369 Hepe-Chr8:16039618 2.61e-78 dispersed
Hepe08g1369 Hepe-Chr8:16039618 Hepe10g1622 Hepe-Chr10:52932223 5.20e-79 dispersed
Hepe01g1860 Hepe-Chr1:83537644 Hepe08g1369 Hepe-Chr8:16039618 3.74e-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56217 PF03791 KNOX2 5.10E-23 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1369 - - - 0.0