Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1382 ATGGATTCCACCTCTTGCTCCGGCGCTCTTTCCCATTTGAAGCTCCCCGGTTCCAATTCCCTCAATTCGGATCAAAGGGTTTTCACGTTATGCTCTTTGCCCAAATCCTCTGGGAAATTGCAAGTTTGTGATAAGTCTACTTCTCAAGGATTAGTGGTTTCTTGTTCTAGCTCCAATGGTGACAGAGATGTAATGAAGGGGCTACACCTTTCTGGCCCCATTGAGAAGAGAACTCGTCTTGGACAAGCATTTTGCTCAGTAGGAACTGTCGCCTATGGTGAATTTGCTTTAGAATCTCACTCTCAGGCAGTGGAAGAGAAGGTTGGAGTTCTGCTCCTGAATCTAGGAGGGCCAGAAACGCTTGATGATGTTCAGCCATTTCTGTACAATCTATTTGCAGATCCGGATATTATTCGGCTCCCAAGGTTGTTCCGTTTCCTCCAAGAGCCATTGGCAAAATTAATTTCTACCTTTCGTGCTCCCAAAAGCAAAGAAGGGTATGCTTCAATAGGAGGTGGCTCACCTTTGCGTAAAATAACAAATGAGCAGGCACAGGCGATTAAAATGGCTTTGGAAGAGAAAAACATATCTGCTAATGTCTATGTGGGAATGCGCTATTGGTACCCTTTCACAGAGGAAGCAATTCAGGAAATTAAGAGGGATGGGATAACAAGACTTGTGGTGCTGCCATTGTATCCACAGTACTCTATTTCTACAACTGGATCCAGTATTCGTGTTCTCCAGAAGATTTTCAGGGAAGATGCATATCTCTCAACATTGCCTGTTTCGGTTATAAAGTCCTGGTATCGACGAGAAGGGTATATTAAGTCAATGGCTGACTTGATTCATGCCGAGCTGAAGAATTTTGTCAGTCCTCAGGAGGTTATGATCTTCTTTAGTGCACACGGGGTTCCCGTCAGTTATGTTGAGAATGCTGGAGATCCATACAAAGATGAAATGGAGGAGTGCATCTACCTAATCATGCAAGAGTTGAAAGCCAGAGGAATTGGAAATGAGCATACTCTTGCTTACCAGAGCCGTGTTGGACCTGTACAATGGCTGAAGCCATACACAGATGAAGTTCTTGTTGAACTTGGCCAGAAGGGTATTAAGAGTCTCCTTGCCGTTCCCGTGAGCTTTGTGAGTGAGCATATTGAGACTCTTGAGGAGATAGATATGGAGTATAAGCACTTGGCACTTGAATCTGGGATAGAAAACTGGGGGCGTGTGCCTGCTCTCAACTGCAAGTCTTCATTCATTTCAGATCTGGCTGATGCCGTAATTGAAGCCCTTCCATCTGCCACGGCATTGTCGCCCCACAGAAGCTCGACAGATGCAGATGATCATGATCCTTCCCAATATGCTATCAAATTGTTATTTGGTTCAATCCTGGCATTCATCTTGTTACTCTCACCAAAAGCACTTTTGGCGTTTAGGAATAATTTCATATAG 1452 44.35 MDSTSCSGALSHLKLPGSNSLNSDQRVFTLCSLPKSSGKLQVCDKSTSQGLVVSCSSSNGDRDVMKGLHLSGPIEKRTRLGQAFCSVGTVAYGEFALESHSQAVEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQEPLAKLISTFRAPKSKEGYASIGGGSPLRKITNEQAQAIKMALEEKNISANVYVGMRYWYPFTEEAIQEIKRDGITRLVVLPLYPQYSISTTGSSIRVLQKIFREDAYLSTLPVSVIKSWYRREGYIKSMADLIHAELKNFVSPQEVMIFFSAHGVPVSYVENAGDPYKDEMEECIYLIMQELKARGIGNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGIKSLLAVPVSFVSEHIETLEEIDMEYKHLALESGIENWGRVPALNCKSSFISDLADAVIEALPSATALSPHRSSTDADDHDPSQYAIKLLFGSILAFILLLSPKALLAFRNNFI 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16238818 16242395 + Hsped.08g13820.1 Hepe08g1382 577354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1382 483 CDD Ferrochelatase_C 278 414 IPR033644 -
Hepe08g1382 483 SUPERFAMILY Chelatase 106 438 - -
Hepe08g1382 483 CDD Ferrochelatase_N 108 269 IPR033659 -
Hepe08g1382 483 Hamap Coproporphyrin III ferrochelatase [cpfC]. 106 431 IPR001015 GO:0004325(InterPro)|GO:0006783(InterPro)
Hepe08g1382 483 ProSitePatterns Ferrochelatase signature. 297 316 IPR019772 GO:0004325(InterPro)|GO:0006783(InterPro)
Hepe08g1382 483 Gene3D - 107 431 - -
Hepe08g1382 483 FunFam Ferrochelatase 107 285 - -
Hepe08g1382 483 Pfam Ferrochelatase 107 430 IPR001015 GO:0004325(InterPro)|GO:0006783(InterPro)
Hepe08g1382 483 NCBIfam ferrochelatase 106 430 IPR001015 GO:0004325(InterPro)|GO:0006783(InterPro)
Hepe08g1382 483 Gene3D - 269 412 - -
Hepe08g1382 483 PANTHER FERROCHELATASE 102 432 IPR001015 GO:0004325(PANTHER)|GO:0004325(InterPro)|GO:0005739(PANTHER)|GO:0006783(InterPro)|GO:0006783(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1382 K01772 - - csv:101216568 838.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0656 Hepe-Chr8:5847504 Hepe08g1382 Hepe-Chr8:16238818 2.90e-179 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g60 . Blo12g01008 . . . . . . Cmo05g00110 Cmo12g00571 . Cma05g00103 . Car12g00578 Sed08g1759 Cpe07g00551 . Bhi04g00495 Tan02g1649 Cmetu03g0633 . Hepe08g1382 . Lcy13g2176 . . . . . . . Cone4ag1651 Cone7ag1299 . . . . . . . . . . . . . . . . . . Cma12g00630 . Car05g00089 Cpe11g00083 . . . . . . . . . . . . . . . Lsi08g01574 Csa02g01847 Chy03g01637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010052 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 33