Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1383 ATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATACTGCATCCAACAAGCGCAAGTACGACGACCAACCTCCACCCATGGTCACCCGTCGCCCGACTGGTTTCTCCGGCCCCATCACTTCTCCTTCCTCCGATTCCCCTCATCCTCCGCCTGCGTCGTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTCGCTAAGCAGCGTGCTCAGGAGATTGCCTCTCGGTTGATTATCTCCAGCGCTGGCGTCGGGGCTGGTGCTGGACCCGGCGTCGGGGCTGATGTCAAACGTCCCAGGGTTGAGAACGGCGGAGGGTTTGATTCCTACGACAAGGGTTTTAGTTCTGGTCCAGACCTGAAGTCTCACATGTCAAGTTCAGCTCCTTCAGCAATACCTGTTTCCTATGGTTTCCAAGGGGCAAGCAAGAAGATTGAGATTCCAAATGGCAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGACGCAGATCCCAATTCGACTTCCCGGATGGTTGAACTAATGGGCACTGCTGATCAAATTGCTAAGGCCGAGCAGCTGATAAGTGATGTTCTTTCTGAGGCTGAAACTGGAGGTTCTGGCATAGTATCCCGAAGAATAACTGGTCCATCAGGATCTGAGCAGTTTGTTATGAAAATTCCTAATAATAAGGTTGGCTTGGTTATTGGTAAAGGCGGTGAAACAATCAAAAGTATGCAAGCTAGGACTGGAGCCCGTATTCAGGTGATACCGTTGCACTTACCCCCTGGAGATACATCTTCAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAATTGGTTAATGAAGTTATCAGTGAGAATCGTGCAAGAAATTCAGGTATGTCAGGAGGGTATAATCAGCAAGGTTATCAAGCTCGACCCCCTTCAAGTTGGGGGCCTCCTGGAGCTCCACCAATGCAGCAACCTGGTTATGGTTATGGACAACAAGGTGGATACTCTGGTCCTTCATCTCAGTATAACATGCAACAACCTGCTTATCAGGGTTATTCACAACCTGCATCGGGTGGATATGCTTCCAATTGGGACCAGTCTACCGCTGCAGCAAATCAACCTGCTACTCAGGGAAGTGGTTATGATTACTACAGTCAACAGCCCACACAGCAACAGCAGACACCTGGAGGTACTACTACTACAGGAGACAACAGTGGTTACAATTATAGTCAACAACAAGCCTCTACTTATAATCAGCAGGGTTATTCTCAAGATGGCTATGGTGGGGGTTACCAAGCACCTCAGTCTGGTTACGGCCAGCCGCCTACGTATGATCAGCAAGGTTATACTTCTGCTCCAAACTATGGTAATGCCAGTGCAGCCCAAGATGGGCTCAATTCATATGGGTCTCAGGGGGACTCATCACAGACGGTACCTCCTGCACAACCCTCTTCAGTGAGCCAGCAAGGTTATGGTGCAAATCAACAGCCTAGCCCTAACCCAGGGAGTTACCCTCAACCAAATCAGTCCGGGTATGGAATGACTGCACCTTCCCAAACTGGCTATGGAAATCAACCAGCTGCTCAGGCTGCGTATGCGGCTGCCGGTTATGGAGCTCCTCAAGCTCAGAAACAACAGCCTGCAAATCCAACTGCATATGGCCAGAGCACTCAGTCCCCAAGCACAGCTAGTGGCTATGGGCAACCAGCTGCTGCGTCTGGATATTCCAGTTCTCAGCCTCCAGCATCTGGGTACACTCAATCAGATTCCGGTTCTCAACGTGCTCCCCCATCCAGTTATGGCACTGCAGCTCAGCCAGGGTTTGCGCCACCACCTTATGGTGTTCCTCCAACTACTCAGCCGGGTTATGGGCAAGCTCCAACGTCTTATAGCTCCTCTTATGGTGCTGGTTACCCTCAACCTTCATATTCTTCTGATGGTAATGCAGGTGGTGCTACTCGTGGGGGCTATGATTCTGCATCGGCTGCTCAGACGGCGCCACAAAGTGGGGTTCCGAAAGCATCACCAAAAAGTTAA 2091 50.31 MADEAQYSSGTDTASNKRKYDDQPPPMVTRRPTGFSGPITSPSSDSPHPPPASYNNVPPPMDEIQLAKQRAQEIASRLIISSAGVGAGAGPGVGADVKRPRVENGGGFDSYDKGFSSGPDLKSHMSSSAPSAIPVSYGFQGASKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSTSRMVELMGTADQIAKAEQLISDVLSEAETGGSGIVSRRITGPSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSSERTLQIDGSSEQIESAKQLVNEVISENRARNSGMSGGYNQQGYQARPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQQPAYQGYSQPASGGYASNWDQSTAAANQPATQGSGYDYYSQQPTQQQQTPGGTTTTGDNSGYNYSQQQASTYNQQGYSQDGYGGGYQAPQSGYGQPPTYDQQGYTSAPNYGNASAAQDGLNSYGSQGDSSQTVPPAQPSSVSQQGYGANQQPSPNPGSYPQPNQSGYGMTAPSQTGYGNQPAAQAAYAAAGYGAPQAQKQQPANPTAYGQSTQSPSTASGYGQPAAASGYSSSQPPASGYTQSDSGSQRAPPSSYGTAAQPGFAPPPYGVPPTTQPGYGQAPTSYSSSYGAGYPQPSYSSDGNAGGATRGGYDSASAAQTAPQSGVPKASPKS 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16242666 16248395 - Hsped.08g13830.1 Hepe08g1383 577355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1383 696 ProSiteProfiles Type-1 KH domain profile. 141 208 - -
Hepe08g1383 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 143 219 IPR036612 GO:0003723(InterPro)
Hepe08g1383 696 ProSiteProfiles Type-1 KH domain profile. 233 301 - -
Hepe08g1383 696 Gene3D K Homology domain, type 1 141 221 IPR036612 GO:0003723(InterPro)
Hepe08g1383 696 MobiDBLite consensus disorder prediction 347 544 - -
Hepe08g1383 696 MobiDBLite consensus disorder prediction 43 57 - -
Hepe08g1383 696 Pfam KH domain 237 303 IPR004088 GO:0003723(InterPro)
Hepe08g1383 696 Pfam KH domain 144 209 IPR004088 GO:0003723(InterPro)
Hepe08g1383 696 MobiDBLite consensus disorder prediction 676 696 - -
Hepe08g1383 696 MobiDBLite consensus disorder prediction 308 696 - -
Hepe08g1383 696 MobiDBLite consensus disorder prediction 560 618 - -
Hepe08g1383 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 235 351 IPR036612 GO:0003723(InterPro)
Hepe08g1383 696 MobiDBLite consensus disorder prediction 639 667 - -
Hepe08g1383 696 Gene3D K Homology domain, type 1 225 328 IPR036612 GO:0003723(InterPro)
Hepe08g1383 696 SMART kh_6 232 306 IPR004087 GO:0003676(InterPro)
Hepe08g1383 696 SMART kh_6 140 213 IPR004087 GO:0003676(InterPro)
Hepe08g1383 696 CDD KH-I 144 208 - -
Hepe08g1383 696 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 123 501 - GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Hepe08g1383 696 FunFam KH domain-containing protein 229 328 - -
Hepe08g1383 696 MobiDBLite consensus disorder prediction 308 328 - -
Hepe08g1383 696 MobiDBLite consensus disorder prediction 1 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1383 K13210 - - csv:101216803 1071.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0564 Hepe-Chr2:5687379 Hepe08g1383 Hepe-Chr8:16242666 1.47e-77 dispersed
Hepe06g0306 Hepe-Chr6:10828596 Hepe08g1383 Hepe-Chr8:16242666 5.78e-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g62 . . . . . . . . Cmo05g00109 Cmo12g00572 . Cma05g00102 . Car12g00580 Sed08g1760 Cpe07g00553 . Bhi04g00496 Tan02g1648 Cmetu03g0500 . Hepe08g1383 . Lcy13g2177 . . . . . . . Cone4ag1652 . Cone17ag0917 Cone20ag0260 . . . . Blo17g00293 Blo18g00287 . Bda13g01608 Bpe14g00257 . . . . . . . Cma12g00631 . Car05g00374 Cpe11g00082 . . . . . . . . Cla08g01021 Cam08g1470 Cec08g1048 Cco08g1172 Clacu08g1174 . Cre08g0956 Lsi08g01575 Csa02g01846 Chy03g01638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007208 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 37