Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1385 ATGAATGCTCTGGTGGATATGGCAAGCCCAAATTCTGTCATTGTAGCTGGATTTCCTATCCTTTTGACTCTGCGGGAATCTGGATGCTCTGCTCTTACTAGTGCTGATAATCATATAGTTGATCAATTGGGGTTCTTAGGCTCTTCTCCGATGTTGACTGCCCTGCAACGCAACGATTTGGCGGGTGCTTCCCGAGATCGTATGAGTTCCTCTGGTAATGCTGAGTTTCAAGATCAGTTAGCCGGAGCAATCCCTATTAATTCTCTTTTTCAGTCCACCTCTCTTGCTCCAGTGAACGATATTCGTGAGAATATGAAAGATTCAGCATTTTCATACCCTCAGTTCCAGGAACTAGGAAATTTTAGAACTTGCACCTTACACAGTTCCTCTAATGCTTCAAATTCTTCATTTGAAAGTTCTCTGAATTGTGAAGGTGATGAGTCTCTATGTAATGCAAAGAACGAGTGGGAAAGCGATCGATTTCATTGTATTCAGCAACTTGCTAGGGATAACCCAGAAAGATCAGATTTCCAGAGCATCTCGTCAATGGAAAACCTGGATCAGAATGGTTGGATGCCATCCAACACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTAAGTCTTGCCACATCCGAACCCGTCATCGTTGGAGGAACCAATTTCCTGGACCAGTATTCACAGTTGACATTCTCTGGTGCTACTCAGCCTTGCATGAACAGTTTGGAATTTGCCTCAAACCCGAATTCGTGCTACTCCAGGGATCTCTCTCTAAGTTACAGATGTGGTAGTCCTGTTCACCTCTCTCAAGCAATAGCGGGATCGAGATATCTTTCGGTCATTCAGGGCGTACTAGCCCAAATTGCAAGCTATTCACTGGAAAGTTCAGATCAAGTTAGTCATTCAACAACCACAGTTGGGTTTGTGCCATTCTCATCAAGTTCCCTGGATGATGCGACAACTGATTTTGGTCCTGATGTAATTGGTAGATGCAGTTCTCAAATGGAGCCTCAATGGCAAAAGCTATCTAGTGATGCCAAGAGATCCCATCTGTTGACTCTACTACAATTGATTGATGAGAGGTACACGCAATGCTTGGACGAGATTCATACCGTTACATCTGCATTTCATGCCGCCACCGATTTGGATCCTCGCTTGCATACTCGTTATACTCTGCAGACAATCACTTCTGTGTATAAGAGCCTGAGGGAGAAGATTACCAATTGTATTATTGCTATGGGGATGCATTCTAACACAATGTGCACCAAGGAGAAGGAAAAATCCTTTGAGGCGACGTTCATCCAGAAGCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGGCCACAGAGAGGCTTGCCTGAGAAGTCTGTCTCAGTTCTAAGGGCATGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTATCTAATTGGTTCATCAATGCTCGTGTCCGGTTGTGGAAACCGATGATCGAAGAAATGTATACTGAAATGAGCAGAAGAAAATTTAGTCAAAACGAGGAAGGATTCGAAAGAATTCGTCGAACCCAGATAGGCATCCGTAGTGAGAAGAAGTAG 1644 43.67 MNALVDMASPNSVIVAGFPILLTLRESGCSALTSADNHIVDQLGFLGSSPMLTALQRNDLAGASRDRMSSSGNAEFQDQLAGAIPINSLFQSTSLAPVNDIRENMKDSAFSYPQFQELGNFRTCTLHSSSNASNSSFESSLNCEGDESLCNAKNEWESDRFHCIQQLARDNPERSDFQSISSMENLDQNGWMPSNTMNSKLWNELSLSLATSEPVIVGGTNFLDQYSQLTFSGATQPCMNSLEFASNPNSCYSRDLSLSYRCGSPVHLSQAIAGSRYLSVIQGVLAQIASYSLESSDQVSHSTTTVGFVPFSSSSLDDATTDFGPDVIGRCSSQMEPQWQKLSSDAKRSHLLTLLQLIDERYTQCLDEIHTVTSAFHAATDLDPRLHTRYTLQTITSVYKSLREKITNCIIAMGMHSNTMCTKEKEKSFEATFIQKQWALQQLKRKDNQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYTEMSRRKFSQNEEGFERIRRTQIGIRSEKK 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16277432 16279436 - Hsped.08g13850.1 Hepe08g1385 577357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1385 547 Gene3D - 444 525 - -
Hepe08g1385 547 Pfam Homeobox KN domain 468 507 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe08g1385 547 SUPERFAMILY Homeodomain-like 452 520 IPR009057 -
Hepe08g1385 547 SMART HOX_1 451 515 IPR001356 GO:0003677(InterPro)
Hepe08g1385 547 SMART prehox3 266 408 IPR006563 -
Hepe08g1385 547 ProSiteProfiles 'Homeobox' domain profile. 448 511 IPR001356 GO:0003677(InterPro)
Hepe08g1385 547 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 213 524 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe08g1385 547 Pfam Associated with HOX 272 407 IPR006563 -
Hepe08g1385 547 CDD homeodomain 451 512 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1385 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1385 Hepe-Chr8:16277432 Hepe10g0889 Hepe-Chr10:24538469 6.91e-33 dispersed
Hepe08g1385 Hepe-Chr8:16277432 Hepe05g0443 Hepe-Chr5:5748508 9.79e-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g68 . . . . Bpe02g01536 . . . Cmo05g00107 Cmo12g00574 . Cma05g00100 . Car12g00582 . Cpe07g00555 . Bhi04g00500 . . . Hepe08g1385 . Lcy13g2179 . . . . . . . . . Cone17ag0921 Cone20ag0264 . . . . Blo17g00292 . Bda01g01326 Bda13g01607 Bpe14g00258 . Bma01g00927 . . . . . Cma12g00634 . Car05g00086 Cpe11g00080 . . . . . . . . . . . . . . . Lsi08g01577 Csa02g01843 Chy03g01640 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003901 2 8 1 1 2 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56220 PF07526 POX 1.90E-20 No_clan Hepe TF