Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1418 ATGACAGACCACACTGGAAGAAACAGGCTTCTTAACCAAGCCGCCATGGAAGGCAATGTAACAACGTTGTTAGAGTTACTCCAGCAAGATCCATTGCTACTCGACAGAGTCAACAACGATTCCACAGACACTCCTCTGCACGTGGCTACTCTTCTTGGGCACGTGAGATTTGTGGATGAGATTCTGAATCGAAGGCCTCAATTGGCCAAAGAGTTGGATTCTCGTGGATCTTCGGCTCTCCACTTGGCCGCCGCCAAAGGGTTTGTGGAAGTGGTCAAACTCTTGCTGCGAGTTGACGCTGATATGTGTTTGTCATGGGACGCCGATGGCCGGAACCCTCTCCACCTCGCCGCTGTCAGAGGCCGAGTCGATGTGTTGGCGGAGCTGGTTAGAGCCAGACCGGTCGCCGCTCGAATTGTGGTGGACGGCGGCGGGACGGTGTTGCATTTGTGTGTTAAGTCCAACCAGCTGGAGGCACTCAAGATGTTGATTGAAAATGTCACATTCGATAACAGTTTTGTTAATACTAAGGATGATTATGGCTTCACTATCCTCCATTTAGCGGTCTCCAACAAACAACTTCGGACAGTGGAATATTTAATCAACAACACTAGAATCAAAGTAAATGCCTTAACCTCAAATGGGTTAACAGCACTAGACATTCTCATTCAAAGCCACAGAGATTTAAAAGACATGGACATTTCACACACTCTCACCGCCGCCGGAGCTTTCCAAACCACCGCTAACAAAAACCCACCACCATCGTCTTCATCTTTATCTTTATCTTCATGGTCATCTTTTTCTCTGGACAAAATCCAGATAACCCAAGTTGTCAAAAGAGTAATATCCGCGTTTTTCGACAACAAAAACGAATCGTGGATCTTGAGGAAGCAAGATGCATTAATGGTGGGGGCATCACTGATTGCAACAATGGCATTTCAAGCCGGGGTAAACCCTCCCGGTGGCGTATGGCAAGACGATAATCCGTCGATGAATCGAACCGCCGGAACTTCGATATTGGCGGACAAACACCTAAAGATATACAATAAGTTCCTTGCATTTAACACAACAGGGTTCACGGCTTCATTGATTGTGATTTTGATGCTCATCACTGGATTACCCGCAAGACATCTCATTTTTGTGAGGATTCTTATGATTATGATGTGGGTTGCAGTGTGTTCCATGGCTTACACTTATGGATTCTCCATCAAATTTTTCACTCCCAAGGATTTTGATTCCATTATCTTTAATATGTCTATTACCGTCGCTTTCGTGGTTTCTGCTTCCTTTATTTTCTTCTTCCTTGGGAAGCTCTTCTATATTCTTTCTCATCAGGACGGGAAACTCAATACCAATTCACCAAAACCATCCACAAACCAACTCCCTTGA 1389 45.36 MTDHTGRNRLLNQAAMEGNVTTLLELLQQDPLLLDRVNNDSTDTPLHVATLLGHVRFVDEILNRRPQLAKELDSRGSSALHLAAAKGFVEVVKLLLRVDADMCLSWDADGRNPLHLAAVRGRVDVLAELVRARPVAARIVVDGGGTVLHLCVKSNQLEALKMLIENVTFDNSFVNTKDDYGFTILHLAVSNKQLRTVEYLINNTRIKVNALTSNGLTALDILIQSHRDLKDMDISHTLTAAGAFQTTANKNPPPSSSSLSLSSWSSFSLDKIQITQVVKRVISAFFDNKNESWILRKQDALMVGASLIATMAFQAGVNPPGGVWQDDNPSMNRTAGTSILADKHLKIYNKFLAFNTTGFTASLIVILMLITGLPARHLIFVRILMIMMWVAVCSMAYTYGFSIKFFTPKDFDSIIFNMSITVAFVVSASFIFFFLGKLFYILSHQDGKLNTNSPKPSTNQLP 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16770378 16773489 + Hsped.08g14180.1 Hepe08g1418 577390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1418 462 Gene3D - 1 261 IPR036770 -
Hepe08g1418 462 SMART ANK_2a 180 210 IPR002110 GO:0005515(InterPro)
Hepe08g1418 462 SMART ANK_2a 109 138 IPR002110 GO:0005515(InterPro)
Hepe08g1418 462 SMART ANK_2a 41 70 IPR002110 GO:0005515(InterPro)
Hepe08g1418 462 SMART ANK_2a 214 248 IPR002110 GO:0005515(InterPro)
Hepe08g1418 462 SMART ANK_2a 75 104 IPR002110 GO:0005515(InterPro)
Hepe08g1418 462 SMART ANK_2a 143 171 IPR002110 GO:0005515(InterPro)
Hepe08g1418 462 Pfam Ankyrin repeat 109 131 IPR002110 GO:0005515(InterPro)
Hepe08g1418 462 ProSiteProfiles Ankyrin repeat profile. 109 131 IPR002110 GO:0005515(InterPro)
Hepe08g1418 462 ProSiteProfiles Ankyrin repeat region circular profile. 75 102 - -
Hepe08g1418 462 PANTHER HOMEOBOX PROTEIN WARIAI 9 426 - -
Hepe08g1418 462 Pfam Domain of unknown function 292 403 IPR026961 -
Hepe08g1418 462 ProSiteProfiles Ankyrin repeat profile. 75 102 IPR002110 GO:0005515(InterPro)
Hepe08g1418 462 Pfam Ankyrin repeats (3 copies) 11 102 IPR002110 GO:0005515(InterPro)
Hepe08g1418 462 Pfam Ankyrin repeats (3 copies) 148 225 IPR002110 GO:0005515(InterPro)
Hepe08g1418 462 ProSiteProfiles Ankyrin repeat region circular profile. 109 131 - -
Hepe08g1418 462 SUPERFAMILY Ankyrin repeat 10 225 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1418 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1414 Hepe-Chr8:16699402 Hepe08g1418 Hepe-Chr8:16770378 4.10e-15 dispersed
Hepe08g1418 Hepe-Chr8:16770378 Hepe08g1422 Hepe-Chr8:16815316 2.01e-27 dispersed
Hepe08g1416 Hepe-Chr8:16746073 Hepe08g1418 Hepe-Chr8:16770378 8.72e-255 proximal
Hepe08g1418 Hepe-Chr8:16770378 Hepe08g1420 Hepe-Chr8:16778282 8.28e-10 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g137 . . . . . . . . . . . . . . Sed08g1788 . . Bhi04g01497 Tan02g1599 Cmetu03g0638 . Hepe08g1418 . Lcy13g2206 . . . . . . . . . . . . . . . . Blo18g00266 . . . . . Bma02g00544 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00846 . Chy03g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58