Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g1423 | ATGGAAGGTGGCGCTCCGTACAATCCACGTACCGTCGAAGAGGTCTTCAGGGATTTCAAAGGCCGCAGAGCTGGTTTGATTAAAGCTCTCACTACTGATGTTGAGGAGTTCTACCAGCAATGCGACCCTGAGAAAGAGAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCTGAGCTTCCTGAACCTGCGCTGGGCATAAATTTTGCCAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAACGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCGGAACCTCAAATAAAAACTCCGACGACGAAGCCAGTTCAATTGAAGGACGAGGAAGAGGAAGGTTTGGAAGAGGAAGAGGAGGAAGAACATGGAGAAACGCTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAGTGTGTGAAGATCACTCCGGCTAGGGCAGAGCATATAAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCTTGA | 768 | 44.27 | MEGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKTPTTKPVQLKDEEEEGLEEEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP | 255 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 16817032 | 16820562 | - | Hsped.08g14230.1 | Hepe08g1423 | 577395 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g1423 | 255 | PANTHER | CPG BINDING PROTEIN | 8 | 254 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Hepe08g1423 | 255 | Pfam | PHD-finger | 202 | 248 | IPR019787 | - | |
Hepe08g1423 | 255 | FunFam | PHD finger alfin-like protein | 194 | 250 | - | - | |
Hepe08g1423 | 255 | SUPERFAMILY | FYVE/PHD zinc finger | 191 | 252 | IPR011011 | - | |
Hepe08g1423 | 255 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 250 | IPR013083 | - | |
Hepe08g1423 | 255 | MobiDBLite | consensus disorder prediction | 145 | 195 | - | - | |
Hepe08g1423 | 255 | CDD | PHD_AL_plant | 201 | 251 | IPR044104 | - | |
Hepe08g1423 | 255 | ProSitePatterns | Zinc finger PHD-type signature. | 202 | 248 | IPR019786 | - | |
Hepe08g1423 | 255 | ProSiteProfiles | Zinc finger PHD-type profile. | 199 | 251 | IPR019787 | - | |
Hepe08g1423 | 255 | SMART | PHD_3 | 201 | 249 | IPR001965 | - | |
Hepe08g1423 | 255 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Hepe08g1423 | 255 | MobiDBLite | consensus disorder prediction | 145 | 177 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g0714 | Hepe-Chr1:69827679 | Hepe08g1423 | Hepe-Chr8:16817032 | 2.59e-111 | dispersed | |
Hepe05g0086 | Hepe-Chr5:951169 | Hepe08g1423 | Hepe-Chr8:16817032 | 2.55e-109 | dispersed | |
Hepe08g1423 | Hepe-Chr8:16817032 | Hepe08g2683 | Hepe-Chr8:68852467 | 3.06e-148 | dispersed | |
Hepe06g0774 | Hepe-Chr6:54349961 | Hepe08g1423 | Hepe-Chr8:16817032 | 8.40e-49 | transposed | |
Hepe07g0556 | Hepe-Chr7:5941507 | Hepe08g1423 | Hepe-Chr8:16817032 | 5.22e-123 | transposed | |
Hepe03g1442 | Hepe-Chr3:71188956 | Hepe08g1423 | Hepe-Chr8:16817032 | 4.93e-134 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56226 | PF12165 | Alfin | 2.10E-69 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g1423 | K26274 | - | csv:101208889 | 457.218 |