Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1423 ATGGAAGGTGGCGCTCCGTACAATCCACGTACCGTCGAAGAGGTCTTCAGGGATTTCAAAGGCCGCAGAGCTGGTTTGATTAAAGCTCTCACTACTGATGTTGAGGAGTTCTACCAGCAATGCGACCCTGAGAAAGAGAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCTGAGCTTCCTGAACCTGCGCTGGGCATAAATTTTGCCAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAACGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCGGAACCTCAAATAAAAACTCCGACGACGAAGCCAGTTCAATTGAAGGACGAGGAAGAGGAAGGTTTGGAAGAGGAAGAGGAGGAAGAACATGGAGAAACGCTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAGTGTGTGAAGATCACTCCGGCTAGGGCAGAGCATATAAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCTTGA 768 44.27 MEGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKTPTTKPVQLKDEEEEGLEEEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16817032 16820562 - Hsped.08g14230.1 Hepe08g1423 577395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1423 255 PANTHER CPG BINDING PROTEIN 8 254 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe08g1423 255 Pfam PHD-finger 202 248 IPR019787 -
Hepe08g1423 255 FunFam PHD finger alfin-like protein 194 250 - -
Hepe08g1423 255 SUPERFAMILY FYVE/PHD zinc finger 191 252 IPR011011 -
Hepe08g1423 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Hepe08g1423 255 MobiDBLite consensus disorder prediction 145 195 - -
Hepe08g1423 255 CDD PHD_AL_plant 201 251 IPR044104 -
Hepe08g1423 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Hepe08g1423 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Hepe08g1423 255 SMART PHD_3 201 249 IPR001965 -
Hepe08g1423 255 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe08g1423 255 MobiDBLite consensus disorder prediction 145 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0714 Hepe-Chr1:69827679 Hepe08g1423 Hepe-Chr8:16817032 2.59e-111 dispersed
Hepe05g0086 Hepe-Chr5:951169 Hepe08g1423 Hepe-Chr8:16817032 2.55e-109 dispersed
Hepe08g1423 Hepe-Chr8:16817032 Hepe08g2683 Hepe-Chr8:68852467 3.06e-148 dispersed
Hepe06g0774 Hepe-Chr6:54349961 Hepe08g1423 Hepe-Chr8:16817032 8.40e-49 transposed
Hepe07g0556 Hepe-Chr7:5941507 Hepe08g1423 Hepe-Chr8:16817032 5.22e-123 transposed
Hepe03g1442 Hepe-Chr3:71188956 Hepe08g1423 Hepe-Chr8:16817032 4.93e-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56226 PF12165 Alfin 2.10E-69 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1423 K26274 - csv:101208889 457.218