Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1435 ATGGCGATCCAATTTAAGTTCAGGAGCTCGGTGAACTTCGACTCGGTGGATATCGAAGGCCGATCTTCCATATCAATTGGCGATCTTAAATCCAAAATTATTCGCATGAAGAACCTCGATACCTGCCAAAATTTTGATCTCGTATTCTCGGATGCCCGAACTGGCCATGATTTGGTTGACGAGAAACTTGAAATTCCAAGTGGTTCATGCGTGATAATCAAGAGAGTTCCCGCGGGATCAATTCCTTCCAATGTTGTGCATCACGACTTGTTTGGGAACTTTCAAGTCAAAGACACTGACATGGTTAATTCATCTCGTCCAGTGAATACTGAGACGGACAATTTTGATGATTTTGGCGTAGACTTATACCCTATTCGCAAAGCAAATTCATCAATTTCTCTCAATGATAAAAATAATAATGCTGTTAGACGTTATAAGGAGACTGAAAGAGGATATATTGAGCCTGAAGGAAGTGGCATTAGTGAGGCTATTCAAGGAGATTCAAGTCATGGTACAACAGTTGGAGGAACTGAGCTGCAAACGAACATCAAAGTTAATATTGGCGAGGGCATTGGTTTGGAGAAACCAGTTGTTGTGATGGCTTCAGTGAATCATAATTGTGAAATACCTTCAGAACTGAAGTGTACTCTTTGCAACTCACTCTTTGTGGATGCTGTAATTATTGGTTGCTGCAAGCATAGTTTTTGTGAGAAATGCATTCATCATGTTCTGCTGCAAAAGGAAAAGTGCCCCAAGTGTGCCTCTACTAAATATAAACTAGAAGATTTGTCGCCAAATTTATCTCTTAGGCAAAATATTGCCCGTTTCCTTGAGTCTCAGATTCTGATGGGCGACTCAGACAATGTTTATCATCATGATGCACCAGATGAAGAATCAAGAATTGAAGGAAAAGACATGCCTTGTTTTCCTTATGCTAATAGTAGGGGTTGTAATCAAGAAGTGGTAGAAGACGTCCATGACTCATCATTAAGAAGAAATATGAAGGTTAAAGTCGATGGAACACAACTTGGATCTGGTAGGCCTCGAGACCTTCCTCCTTTTGATGATTGTGAAGGGGAAAGTCAGCCTGTTTTTGGGGATTTTAAGCATGGGTTGCTGGTCAATACCTATGATATACCAGGCAAAACCCAAAACATTACAGATTTTAGAAGACACAAAAAGCGTGGCCGTGCTTGTTACATGTGTGGTTCTCTGGACCATCTCATTAGAGACTGTCCAGTTGCTTCAAAGCCACATCCCATGCATCTAATGGGAGCTACGCCATATTATGCATCACCTTGGCATCATGTCAGTTCTTTTACGAACCTATATGGTTGTCCCATGGCATTCAATACACCAATGGTACCTGAAGCAAATCCTTACTGGGCATCTACTTATGGTGGATACCCTGCCCCAAGTGGATTCGTGGGCATGAGAGACATGACTGCTCCACCACTCCGGAAGACTGAAGAGTTCTGCGCTGGTTATTTAGAATTCATAGATGTTAGTGACACTAATAAAAAGAGGATGATACCTGATAATCGTGCCAGGAGGAGGTAA 1560 41.67 MAIQFKFRSSVNFDSVDIEGRSSISIGDLKSKIIRMKNLDTCQNFDLVFSDARTGHDLVDEKLEIPSGSCVIIKRVPAGSIPSNVVHHDLFGNFQVKDTDMVNSSRPVNTETDNFDDFGVDLYPIRKANSSISLNDKNNNAVRRYKETERGYIEPEGSGISEAIQGDSSHGTTVGGTELQTNIKVNIGEGIGLEKPVVVMASVNHNCEIPSELKCTLCNSLFVDAVIIGCCKHSFCEKCIHHVLLQKEKCPKCASTKYKLEDLSPNLSLRQNIARFLESQILMGDSDNVYHHDAPDEESRIEGKDMPCFPYANSRGCNQEVVEDVHDSSLRRNMKVKVDGTQLGSGRPRDLPPFDDCEGESQPVFGDFKHGLLVNTYDIPGKTQNITDFRRHKKRGRACYMCGSLDHLIRDCPVASKPHPMHLMGATPYYASPWHHVSSFTNLYGCPMAFNTPMVPEANPYWASTYGGYPAPSGFVGMRDMTAPPLRKTEEFCAGYLEFIDVSDTNKKRMIPDNRARRR 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17207470 17215915 - Hsped.08g14350.1 Hepe08g1435 577407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1435 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 283 IPR013083 -
Hepe08g1435 519 ProSiteProfiles Zinc finger CCHC-type profile. 399 413 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1435 519 Pfam Zinc knuckle 397 413 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1435 519 Pfam DWNN domain 3 77 IPR014891 GO:0008270(InterPro)
Hepe08g1435 519 SUPERFAMILY Retrovirus zinc finger-like domains 386 417 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1435 519 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
Hepe08g1435 519 Pfam Zinc finger, C3HC4 type (RING finger) 214 253 - -
Hepe08g1435 519 Gene3D - 391 449 - -
Hepe08g1435 519 SMART DWNN_2 3 77 IPR014891 GO:0008270(InterPro)
Hepe08g1435 519 SUPERFAMILY RING/U-box 207 278 - -
Hepe08g1435 519 Gene3D - 1 81 - -
Hepe08g1435 519 ProSiteProfiles DWNN domain profile. 3 77 IPR014891 GO:0008270(InterPro)
Hepe08g1435 519 CDD vRING-HC-C4C4_RBBP6 210 263 - -
Hepe08g1435 519 ProSiteProfiles Zinc finger RING-type profile. 215 253 IPR001841 -
Hepe08g1435 519 PANTHER RETINOBLASTOMA-BINDING PROTEIN 6 204 314 - GO:0005634(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1435 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g150 . . . . . . . . . Cmo12g00602 . . . Car12g00644 . Cpe07g00577 . Bhi04g01513 Tan02g1585 . . Hepe08g1435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00661 . . . . . . . . . . . Cla08g00988 . . . . . . Lsi08g00832 . Chy03g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010055 0 4 0 0 0 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 4 1 33