Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1467 ATGGAGGAGATAATGGTGGCTCCGCCGATGGCTCATGAGGTTCGGATACGGATCATTTGCACTTCTCTCTGTCACACCGATATCAAATATTGGAAGATGAAGGATCCTCCGGGGATTGTTCCAAGAATTTTGGGCCACGAAGCTGTCGGAGAGGTAGAGAGTGTAGGAAGTGAAGTGAGTGAAGTAAAGCAAGGGGATATTGTGATCCCTACATTCCTGGCCGAGTGTGGAGAGTGTAGAGATTGTGCATCAAATAAGAGCAATCTTTGCTCTAAACTCTCTTACAAACTCTCTCAAGGGATGCCTCGATGTGGGACGAGTAGGTTCACTGACCTTCATGGACAGCTTTTGCATCATTTCATGTTTGTGTCAAGTTTCAGCGAGTACACTGTGGTCGATGTTGCTCATCTCATTAAGATTGATCCTATTCTCATCCCTCCCGACAAGGCTTGCCTCCTCGGTTGTGGCGTATCAACAGGGGTGGGTGCTGCTTGGAGAACAGCAAATGTGGAAAAGGGATCTACAGTTGCCATTTTTGGGCTGGGGACTGTTGGGTTAGCAGTTGCTCAAGGAGCAAGAATTTGTGGAGCAGCAAGGATTATTGGGATAGATGTCAACCCACATAAATTAACAATCGCAAAAGAGTTTGGAGTCACTGAGTTTGTTAATTCTAGCAGCATTGGTGATAAGTCTGTGAGCCAGGTAATTAATGAGATGACAGATGGAGGTGCAGACTATTGCTTTGAATGTGTTGGACTAAGTTCCTTACTCAAGGAAGCATTTGCATGCTGCAGAAAGGGTTGGGGAAAAACAATTTTATTTGGTGTGGAGGATCAAACATCACTTTTGAGTCTCAAATCAATAGATGTCATTTTTCAAGGGAAAACAGTGATAGGATGCATATTTGGTGGACTTAAGCCCAAATCAGACATTCCCACACTCCTTCAATGGTACACAGATAAGAAACTACATTTGGATTTATTTATCTCACACGAAGTTGGGTTTGAAGACATCAACAAAGCTTTTAATTTGCTAAGTGAAGGCCAATGCCTTAGGTGTGTGATTTGGATGACCAAATGA 1080 43.52 MEEIMVAPPMAHEVRIRIICTSLCHTDIKYWKMKDPPGIVPRILGHEAVGEVESVGSEVSEVKQGDIVIPTFLAECGECRDCASNKSNLCSKLSYKLSQGMPRCGTSRFTDLHGQLLHHFMFVSSFSEYTVVDVAHLIKIDPILIPPDKACLLGCGVSTGVGAAWRTANVEKGSTVAIFGLGTVGLAVAQGARICGAARIIGIDVNPHKLTIAKEFGVTEFVNSSSIGDKSVSQVINEMTDGGADYCFECVGLSSLLKEAFACCRKGWGKTILFGVEDQTSLLSLKSIDVIFQGKTVIGCIFGGLKPKSDIPTLLQWYTDKKLHLDLFISHEVGFEDINKAFNLLSEGQCLRCVIWMTK 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17869294 17879560 + Hsped.08g14670.1 Hepe08g1467 577439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1467 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 45 59 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Hepe08g1467 359 SUPERFAMILY GroES-like 1 168 IPR011032 -
Hepe08g1467 359 FunFam S-(hydroxymethyl)glutathione dehydrogenase 160 300 - -
Hepe08g1467 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 145 321 IPR036291 -
Hepe08g1467 359 Gene3D - 1 352 - -
Hepe08g1467 359 Gene3D - 160 300 - -
Hepe08g1467 359 Pfam Alcohol dehydrogenase GroES-like domain 11 141 IPR013154 -
Hepe08g1467 359 SUPERFAMILY GroES-like 308 356 IPR011032 -
Hepe08g1467 359 Pfam Zinc-binding dehydrogenase 184 318 IPR013149 -
Hepe08g1467 359 PANTHER ALCOHOL DEHYDROGENASE 1 355 - GO:0004024(PANTHER)|GO:0005829(PANTHER)|GO:0008270(PANTHER)|GO:0046294(PANTHER)|GO:0051903(PANTHER)
Hepe08g1467 359 FunFam alcohol dehydrogenase 1-like isoform X1 1 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1467 K00121 - - csv:101212881 631.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0196 Hepe-Chr7:1734508 Hepe08g1467 Hepe-Chr8:17869294 5.00e-27 dispersed
Hepe08g1462 Hepe-Chr8:17757655 Hepe08g1467 Hepe-Chr8:17869294 2.71e-205 dispersed
Hepe08g1467 Hepe-Chr8:17869294 Hepe10g1462 Hepe-Chr10:51496253 2.54e-113 dispersed
Hepe08g1466 Hepe-Chr8:17859081 Hepe08g1467 Hepe-Chr8:17869294 2.53e-207 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g133 Blo01g01352 . . . . . . . Cmo05g01015 . . . . . . . . Bhi04g01548 Tan02g1549 . . Hepe08g1467 . . . . . . . . . . . . Cone20ag0045 . . . Cme03g01364 . . . . . . . . . . . . Cma05g00997 Car05g00879 . Cpe11g00806 . . . . . . . . . . . . . . . Lsi08g00811 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84