Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1513 ATGGCAGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCATATCAGATGAGAGCAGTTTTTATTCGAGACTGCATATTGAGCCTATTTATGATGCCTTTATGTGCCCTTTAACAAAGCAAGTAATGCGGGATCCTGTTACTATTGAAACTGGCCAAACTTTTGAACGTGCGGCCATTGAGAAGTGGTTCAGGGAATGCAGGGAGAGTAGAAGGAGGCCAATCTGTCCGTCGACGCTAAAAGAATTAAAAAGCACGGATCTTAATCCCAGTATTGCTTTAAGGAATACCATTGAAGAGTGGACTGCTAGGAATGAAGCTGTTCAGCTAGATATGGCTCGCAAGTCACTTAACTTGGGAAGTCCAGAGAATGACACTTTGGGATCTTTGAAGTATGTCCAGCATGTCTGCCAAAAGGGTTTATCGAAGCACATCGCACGAAATGCTGGGCTAATACCAATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAGAGTCCAGTTTAGAGCTTTGGAAACCCTTCGAATTGTGGTGCAAGAAGACAATGAGTGTAAGGAAATGTTAGCTGAAGGTGACACTCTTCGTACAGTAGTGAAGTTCTTGCGCCACGAGCGTTCAAGAGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCAAAGTCTGAAGCCTTGTGTGAACAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCGAGCAGCAAATCTGAGAACATCTCCACAGTTGAAAATGCTGATAGGACATTAGAGTACCTGGAGAAGTGTGAGAATAATATTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGACCGCCAGAAACTAAACATTCCATGGCTGCACATTTGGGAGAGCTAGTTCTAAATAACGACGTAAAACTCTTTGTGGCTCAGACTGTGGGATCATCTCTAATTAATATCATGAAAAGTGGCGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAATCAGATATCGTCTTTTGAGGCTAGTGCAAGAGTTTTGGTACAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACAGTTGGTTCGAATCAACTTCCCATGCGATTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCGATTCCATTCCAGTGGAATCTAATAATCAGACTACACTTGTCTCTGAAGATACTGTCCATAACCTGCTACAACTCATTAGCAATACCGGTCCAGCTATCGAGGGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAACTATTTCAAGTATTGTTAATGCCATTAGAAGCTCTGGTGCAATTATCAGCTTGGTTCAATTTATTGAGGCCCCACAGCTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAACATCTCCCCACACTTAAGCCAGGAGCTAGCGGATGCTCTACGTGGCTCGGCTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCAGAAAATACTGGAATCACAGAAGAACAAGCAGCTGCTGCAAGGCTTCTAGGTGATCTCCCTGAAAGGGATTTAGGCCTCTCCAGACAGATGCTTGATGAAGAAGCTTTTGAGTTGGTCTACTCTAGAGTCGTTAGACTCCGCCAAGGGGAAACTAGGGGCAGCAGATTTTTAACACCATTCCTTGAAGGCCTTGTTCGAATTCTTGCAAGGATTACATTTATATTGGCTGATGAGCCTGATGCTCTTGCATTTTGTCGCAACCACAATCTGGCCGCTTTATTCATCGATCTTCTTCAGTCTAATGGACTTGACAATGTGCAGATGGTTTCAGCCATGGCATTGGAAAATTTATCTCTAGAATCCAAAACTTTGACTGAGCTACCTTCGCTTCCGGCACCTGGATTTTGTGCCTCAATTTTTCCATGCTTCAGCACTCAACCAATACTAACAGGGCTGTGTCCTCTCCACCGGGGTACATGCTCTTTGAGGGACAGTTTTTGTCTATTGGATAGTCGGGCAGTGAACTTATTGGTAGCCCTTTTAGATCACCCAAAGGAGAAGGTCGTCGAGGCAGCGCTTGCGGCACTATCTACTCTGTTGGATGATGGGGTTGATGTTGAGAAGGGAGTGGACATTTTGCACAACGCAGATGGGGTTCAGCCTATATTTAACGTGTTGCTTGAAAACCGTACAGAGAATCTGATAAGAAGAGCTGTTTGGACAGTCGAGAGGCTGTTGCGCACGGAGAACATCGCAAACGAATTCTCGAATAATCCAAACGTGAGTACAGCGCTTGTTGATGCCTTCCAGCATGGTGACTACAAAACCAGGCAAATTGCTGAGCGTGCTTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTAATAATATGGGTTAA 2454 43.93 MAESWDGSYDDSGSISDESSFYSRLHIEPIYDAFMCPLTKQVMRDPVTIETGQTFERAAIEKWFRECRESRRRPICPSTLKELKSTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPENDTLGSLKYVQHVCQKGLSKHIARNAGLIPMIVSLLKSTSRRVQFRALETLRIVVQEDNECKEMLAEGDTLRTVVKFLRHERSREKEEAVALLYELSKSEALCEQIGSVNGAILILVGMSSSKSENISTVENADRTLEYLEKCENNIRQMAEYGRLRPLLTQILEGPPETKHSMAAHLGELVLNNDVKLFVAQTVGSSLINIMKSGDKQSKEAALKALNQISSFEASARVLVQEGILPPLVKDLFTVGSNQLPMRLKEVSATILANVVSSGCDFDSIPVESNNQTTLVSEDTVHNLLQLISNTGPAIEGKLLQVLVGLTSSPSTISSIVNAIRSSGAIISLVQFIEAPQLDLRVSAIKLLQNISPHLSQELADALRGSAGQLSSLFRIIAENTGITEEQAAAARLLGDLPERDLGLSRQMLDEEAFELVYSRVVRLRQGETRGSRFLTPFLEGLVRILARITFILADEPDALAFCRNHNLAALFIDLLQSNGLDNVQMVSAMALENLSLESKTLTELPSLPAPGFCASIFPCFSTQPILTGLCPLHRGTCSLRDSFCLLDSRAVNLLVALLDHPKEKVVEAALAALSTLLDDGVDVEKGVDILHNADGVQPIFNVLLENRTENLIRRAVWTVERLLRTENIANEFSNNPNVSTALVDAFQHGDYKTRQIAERALRHVDKLPNFSNIFPNPNNMG 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19068672 19087924 + Hsped.08g15130.1 Hepe08g1513 577485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1513 817 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g1513 817 Pfam Armadillo/beta-catenin-like repeat 681 712 IPR000225 GO:0005515(InterPro)
Hepe08g1513 817 Gene3D - 574 808 IPR011989 -
Hepe08g1513 817 SUPERFAMILY ARM repeat 450 802 IPR016024 -
Hepe08g1513 817 SMART Ubox_2 33 101 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g1513 817 SMART arm_5 347 392 IPR000225 GO:0005515(InterPro)
Hepe08g1513 817 SMART arm_5 139 179 IPR000225 GO:0005515(InterPro)
Hepe08g1513 817 SMART arm_5 591 632 IPR000225 GO:0005515(InterPro)
Hepe08g1513 817 SMART arm_5 673 714 IPR000225 GO:0005515(InterPro)
Hepe08g1513 817 SMART arm_5 448 488 IPR000225 GO:0005515(InterPro)
Hepe08g1513 817 SMART arm_5 181 221 IPR000225 GO:0005515(InterPro)
Hepe08g1513 817 SMART arm_5 266 306 IPR000225 GO:0005515(InterPro)
Hepe08g1513 817 SMART arm_5 307 346 IPR000225 GO:0005515(InterPro)
Hepe08g1513 817 SMART arm_5 718 760 IPR000225 GO:0005515(InterPro)
Hepe08g1513 817 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 810 IPR052608 -
Hepe08g1513 817 Pfam U-box domain 32 106 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g1513 817 CDD RING-Ubox_PUB 31 88 IPR045210 -
Hepe08g1513 817 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 116 IPR013083 -
Hepe08g1513 817 Gene3D - 117 548 IPR011989 -
Hepe08g1513 817 SUPERFAMILY ARM repeat 133 445 IPR016024 -
Hepe08g1513 817 SUPERFAMILY RING/U-box 24 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1345 Hepe-Chr8:15482837 Hepe08g1513 Hepe-Chr8:19068672 1.18e-10 dispersed
Hepe08g1513 Hepe-Chr8:19068672 Hepe10g1828 Hepe-Chr10:55025134 1.93e-129 dispersed
Hepe08g1513 Hepe-Chr8:19068672 Hepe10g1222 Hepe-Chr10:47330852 7.84e-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1513 - - - 0.0