Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1523 ATGTCGGGATCTGAGACTGGTGTGATGACGAGCAGAGAACCCTTCCATATGGGTGTTCAGAATAGCTCCTTACAGTCGCAGGCGGCGGCCCAAAACATGCGATTAGCCTTTAGCGCCGACGGTAGCACAGCCGTCTATCAATCCTCCATGGCTGGAGTTTCTGGTAATGCCGGAATTGAGGGATCGGCTGGTGGAGGGTCGATGTTGCCTCATGGTTTCAACATTAATTCGGTGGGCAGTGAGCAAATGAAGAGGAAGAGGGGCAGGCCAAGAAAGTATGGACCGGATGGCGCCATGGCATTAGGTTTAGGTTCTGGGCCGCCGCCGCCGTCGGGAAGTGGAGGTTTTTCTCCTTCAACTATGGCTAATAATTCTGCTTCAGAAGGATTGGCCTCACCAAATTCATTGAAGAAATCTAAAGGCAGGCCACCTGGTTCTAGTTCTAAGAAAAAACAACAATTGGATGCTTTGGGTTCGGCTGGTATTGGATTCACTCCTCATGTTATCGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGGGCTATTTGTATCCTCTCTGCCAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACTTCTGGTGGAACTGTTACTTATGAGGGGCGGTTTGAACTTTTGTCACTTTCGGGTTCGTTTCTTCTGTCTGAAAATGGTGGTCAGAGAAGCAGAACTGGTGGTTTAAGTGTGTCTTTGTCTGGTCCAGATGGTCGAGTTTTAGGTGGTGGTGTGGCTGGTCTTCTAACGGCTGCATCGCCCGTTCAGGTGGTCGTGGGAAGTTTCATAGCCGAAAGTAACAAGGAACCGAAGTCAGCCCGCCAAACCGAACCCATCGCTGCCTCGTCAATGCTATACCCAGTCGGCTTTGGTCACTTGACAGGAGGAGCCAGTAGTCCATCTCATGGGACAATGAGCGAGTCTTCCGGTGGCGGCCCTGGCAGCCCCCTTAACAACAGCTCCGGAGCCTGCAACAACAACAGCAACCATCCACAGGGCATGTCCGGCATGCCATGGAAGTAA 1074 50.74 MSGSETGVMTSREPFHMGVQNSSLQSQAAAQNMRLAFSADGSTAVYQSSMAGVSGNAGIEGSAGGGSMLPHGFNINSVGSEQMKRKRGRPRKYGPDGAMALGLGSGPPPPSGSGGFSPSTMANNSASEGLASPNSLKKSKGRPPGSSSKKKQQLDALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGRFELLSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIAESNKEPKSARQTEPIAASSMLYPVGFGHLTGGASSPSHGTMSESSGGGPGSPLNNSSGACNNNSNHPQGMSGMPWK 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19506738 19510318 - Hsped.08g15230.1 Hepe08g1523 577495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1523 357 Gene3D - 166 299 - -
Hepe08g1523 357 MobiDBLite consensus disorder prediction 115 154 - -
Hepe08g1523 357 ProSiteProfiles PPC domain profile profile. 160 300 IPR005175 -
Hepe08g1523 357 MobiDBLite consensus disorder prediction 312 357 - -
Hepe08g1523 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 166 280 IPR005175 -
Hepe08g1523 357 CDD DUF296 165 279 IPR005175 -
Hepe08g1523 357 MobiDBLite consensus disorder prediction 70 154 - -
Hepe08g1523 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 164 282 - -
Hepe08g1523 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 25 333 IPR039605 GO:0003680(InterPro)
Hepe08g1523 357 MobiDBLite consensus disorder prediction 314 351 - -
Hepe08g1523 357 FunFam AT-hook motif nuclear-localized protein 1-like 166 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0547 Hepe-Chr3:10658728 Hepe08g1523 Hepe-Chr8:19506738 5.66e-73 dispersed
Hepe06g1032 Hepe-Chr6:58368338 Hepe08g1523 Hepe-Chr8:19506738 2.13e-70 dispersed
Hepe06g1625 Hepe-Chr6:67129009 Hepe08g1523 Hepe-Chr8:19506738 3.12e-70 dispersed
Hepe06g1765 Hepe-Chr6:68749609 Hepe08g1523 Hepe-Chr8:19506738 1.91e-71 dispersed
Hepe07g0228 Hepe-Chr7:2171780 Hepe08g1523 Hepe-Chr8:19506738 4.35e-60 dispersed
Hepe08g1523 Hepe-Chr8:19506738 Hepe08g2448 Hepe-Chr8:65462238 8.76e-54 dispersed
Hepe01g2368 Hepe-Chr1:88111624 Hepe08g1523 Hepe-Chr8:19506738 4.91e-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1523 - - - 0.0