Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1551 ATGCATGGGAAAGCGGGTAGAAACACAACAGATTGGAGAAGAACAACAACAAATATGTCATCAAGTGGACCAAACCAGTCCTCCACGAACACAGGATCAGGATCCTCATCCTCTTCACAATCAAGACACAGCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTCCATTCCCACTTCGAACAATCCGGTTCTTCTTTCGATTACTCAACAGCTTCAATCCATCTCACAACCAACCCAACATTGTCATCATCAACAACAACAACAGCCACAACAGCATATCTCCAACACATCCAAAAATCCATCCTCATCCAACCCTTTGGCTTCCTCCTAGCCCTCAACCCTACCACCCTCAAACTCGTCGCCTTCAGCCAAAACGCCCCCGACTTCCTCACCGCCGTCTCCCACACCGTCCCCACCGTCCCCAACCACCCCCTCCTCGCCTTCGACACCGACCTCCGTTCCATCTTCACTGCCCCCACCGCCACCGCCCTCATCAAGGCCCTCGCCTTCCCCGACGCCACCCTCCTCAACCCTATTCTCGTTCACTCCAAATCCTCATCCAAGCCCTTCTACGCCATCGTCCACCGCGTCACCGCCAGCCTCGTCATCGACTTCGAGCCCGTCAACCCCGATGAACTTCCCGTCACCGCAGCCGGGGCTCTCCAGTCCTACAAACTCGCAGCCAAAGCCATCACTCGCCTCCAAGCCCTCCCAAGTGGCAGCATGCCCAGGCTTTGTGACACCATGGTTCAAGAAGTCTTTGAGCTCACAGGCTATGATAGGGTTATGGCTTATAAATTTCATGATGATCATCATGGGGAAGTTTTCTCTGAAGTCACTAAACCTGGCCTTGACCCTTATTTGGGTTTGCATTATCCAGCCACAGACATTCCTCAAGCTGCTAGGTTTTTGTTCATGAAAAATAAGGTTAGAATGATTGTGGACTGTAGAGCCAAGCATGTGAAAGTAATTCAAGATCCAAATCTTGATTTTGATTTGACTTTATGTGGGTCCACTTTGAGAGCTCCTCATACTTGCCATTTGCAATACATGGAGAATATGGACTCAATTGCCTCTTTGGTTATGGCAATTGTGGTGAATGAAGAGGAACAAGAGGAATTTGATAATAATAATAATAACAATAATGATGCTTCTTTGCAAAAACACAAGAGGAAAAAATTGTGGGGTTTGGTGGTTTGTCATAATACAACTCCAAGATTTGTTCCTTTTCCTCTAAGGTATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTGAACAAGGAATTGGAATTGGAGAGTCAAATTTTGGAGAAAAATATGTTGAGGACTCAAACACTTTTATGTGACATGTTGATGAGAGATGCTCCTTTAGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAAGAATAAGGTATGGAGATTGGGGATAACTCCTACTGATTTTCATCTTCAAGATATTGCTTCATGGATTTTGGAGAATCATATGGATTCAACTGGTTTGAGTACGGATAGCTTGTATGATGCCGGGTACCCCGGCGCGCTTGCCCTAGGCGACGTGGTGTGTGGGATGGCGGCCGTGAGGATAGCTTCCGACGGCGACATGATCTTCTGGTTCCGATCGCACACCGCGTCGGAGATTCGGTGGGGCGGGGCGAAGCATGAGCCGGGTGAGAAGGATGATGGGAGGAAAATGCATCCTAGGTCATCTTTTAAGGCTTTTCTTGAAGTGGTGAAGACAAGGAGTTTGGGTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAGCTTATACTAAGAAGCACTTTTAAAGATAGTAATAGAGATAGTTTGAGTGAGATTAATGGAAAATCAATACAATCAACACTTAGTGATATGAAGATTGATGGGAGGCAAGAATTGGAATCAGTGACAAGTGAGATGGTGAGGTTGATTGAAACAGCTACAGTTCCAATTTTGGCTGTTGATGTGGATGGGTTAGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTATCTGTTCACAAAGCTATTGGCAACCATTTGCTCACATTAGTGGAAGATTCTTCTCTCGAAATTGTCAACAAGATGTTGTTCTTAGCATTGCAAGGTCAAGAGGAGAAAAACGTCCAATTCGAGATCAAAACACGAGGCTCTAAGCTCGAGTCAGGCTCGATAAGCCTAATAGTAAACGCTTGTGCAAGCAAGGACTTGAGTGAAAACGTTGTGGGAGTATGCTTTGTAGCACAAGACATCACATGTCAAAAGATGGTAATGGACAAATTCACCAAATTACAAGGAGATTACAAAGCCATAGTACAAAACCCTAACCCTTTAATCCCTCCAATATTTGGCCTAGACCAATTTGGTTGGTGCTCAGAGTGGAACTTAGCAATGACAAATCTAAGTGGATGCTCACCTGACCAAGTCTTGAACAAGATGCTTTTAGGAGAGGTTTTTGGTACCCAAAACTCAAGTTCTTGCCATCTAAAGAATCAAGAGGCCTTTGTGAATCTTGGAGTCGTCTTGAACAATGCAATGTCTGGTCAAGATTCTGAAAAGATTTCCTTTGGTTTCTTTGGTAGAAGTGGGATTTATGTCGACTGTATTTTATGTGTCAATAAGATATTAGATAGAGATGGAGGAGTGATTGGAGTTTTTTGCTTCTTGCAACTTGCTAGTCAAGAGCTACAACAAGCTTTGAATGTTCAGAAATTGTGCGAGCGAATTGCGTCGAAGAGATTGAAGACTTTGGGATATATTAAGAGACAGATTCAAAATCCTCTTTGTGGGATTGTATTTTCAAGGAAAATGTTGGAGAGAACTGAGTTGGGAGATGAACAGAAGCAACTTTTGCATAATAGTGTTAACTGTCAAAGACAGATCTCCAAGGTTCTTGATGAGTCTCATGATGATCTTGATAAGATCATTGAAGGTTTGATTGAATTAGAAATGGTTGAGTTTTCATTGCATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAGAGGGAAAGGCATCCATATAGTAAATGAGGTTGCAGAAGAGATCATGTCTGAGACTTTATATGGAGACAATTTGAGACTTCAACAAGTCATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACAGGAGGCCAACTTAGGGTTTCAACAAATTTGACTAAGGATCATTTGGGAAACTCAGTACATCTGGTGCATCTTCAATTCAGGATAACATATGTAGGAGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATGAGGATGCATCTGAAGAAGGCTTCAGCCTATTCATAAGTAGAAAGCTGGTGAAGATGATGAATGGAGATGTGAGATTTGTGAGGGAAGCAGGCAAGTCAAGCTTTATCATAACTGTTGAGCTTGCTGCACCACATAAGTTTAAGAACCTAATAACCTAA 3501 43.16 MHGKAGRNTTDWRRTTTNMSSSGPNQSSTNTGSGSSSSSQSRHSSRILTQTSIDAKLHSHFEQSGSSFDYSTASIHLTTNPTLSSSTTTTATTAYLQHIQKSILIQPFGFLLALNPTTLKLVAFSQNAPDFLTAVSHTVPTVPNHPLLAFDTDLRSIFTAPTATALIKALAFPDATLLNPILVHSKSSSKPFYAIVHRVTASLVIDFEPVNPDELPVTAAGALQSYKLAAKAITRLQALPSGSMPRLCDTMVQEVFELTGYDRVMAYKFHDDHHGEVFSEVTKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDPNLDFDLTLCGSTLRAPHTCHLQYMENMDSIASLVMAIVVNEEEQEEFDNNNNNNNDASLQKHKRKKLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNMLRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKVWRLGITPTDFHLQDIASWILENHMDSTGLSTDSLYDAGYPGALALGDVVCGMAAVRIASDGDMIFWFRSHTASEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLGWKDFEMDAIHSLQLILRSTFKDSNRDSLSEINGKSIQSTLSDMKIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVHKAIGNHLLTLVEDSSLEIVNKMLFLALQGQEEKNVQFEIKTRGSKLESGSISLIVNACASKDLSENVVGVCFVAQDITCQKMVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDQFGWCSEWNLAMTNLSGCSPDQVLNKMLLGEVFGTQNSSSCHLKNQEAFVNLGVVLNNAMSGQDSEKISFGFFGRSGIYVDCILCVNKILDRDGGVIGVFCFLQLASQELQQALNVQKLCERIASKRLKTLGYIKRQIQNPLCGIVFSRKMLERTELGDEQKQLLHNSVNCQRQISKVLDESHDDLDKIIEGLIELEMVEFSLHEVLVVSISQVMMKSRGKGIHIVNEVAEEIMSETLYGDNLRLQQVMADFLLISVNYAPTGGQLRVSTNLTKDHLGNSVHLVHLQFRITYVGGGIPESLLNEMFGNDEDASEEGFSLFISRKLVKMMNGDVRFVREAGKSSFIITVELAAPHKFKNLIT 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20894175 20903327 - Hsped.08g15510.1 Hepe08g1551 577523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1551 1166 PRINTS Phytochrome signature 258 277 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 549 568 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 158 180 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 675 690 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 463 483 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 582 600 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 343 364 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 768 788 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 656 672 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 748 765 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 SUPERFAMILY PYP-like sensor domain (PAS domain) 800 907 IPR035965 -
Hepe08g1551 1166 CDD PAS 664 770 IPR000014 -
Hepe08g1551 1166 FunFam Phytochrome 649 780 - -
Hepe08g1551 1166 Pfam PAS fold 786 909 IPR013767 GO:0006355(InterPro)
Hepe08g1551 1166 Pfam PAS fold 656 770 IPR013767 GO:0006355(InterPro)
Hepe08g1551 1166 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 243 423 IPR016132 -
Hepe08g1551 1166 Coils Coil 369 389 - -
Hepe08g1551 1166 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1045 1155 IPR003594 -
Hepe08g1551 1166 MobiDBLite consensus disorder prediction 10 46 - -
Hepe08g1551 1166 Gene3D PAS domain 99 346 - -
Hepe08g1551 1166 SMART HKATPase_4 1045 1157 IPR003594 -
Hepe08g1551 1166 SMART gaf_1 243 443 IPR003018 GO:0005515(InterPro)
Hepe08g1551 1166 Pfam Phytochrome region 446 621 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 Pfam GAF domain 246 432 IPR003018 GO:0005515(InterPro)
Hepe08g1551 1166 SUPERFAMILY PYP-like sensor domain (PAS domain) 659 766 IPR035965 -
Hepe08g1551 1166 SUPERFAMILY GAF domain-like 441 619 - -
Hepe08g1551 1166 PANTHER OS08G0260000 PROTEIN 28 1034 - -
Hepe08g1551 1166 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 991 1153 IPR036890 -
Hepe08g1551 1166 MobiDBLite consensus disorder prediction 1 46 - -
Hepe08g1551 1166 Gene3D - 438 612 IPR043150 -
Hepe08g1551 1166 ProSiteProfiles PAS repeat profile. 786 842 IPR000014 -
Hepe08g1551 1166 Coils Coil 430 450 - -
Hepe08g1551 1166 Gene3D PAS domain 648 784 - -
Hepe08g1551 1166 PIRSF Phytochrome_conventional 24 1163 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Hepe08g1551 1166 Gene3D - 224 595 IPR029016 -
Hepe08g1551 1166 ProSiteProfiles Histidine kinase domain profile. 938 1157 IPR005467 -
Hepe08g1551 1166 SUPERFAMILY GAF domain-like 223 430 - -
Hepe08g1551 1166 CDD HATPase_Phy-like 1044 1155 IPR044767 -
Hepe08g1551 1166 Gene3D - 996 1159 IPR036890 -
Hepe08g1551 1166 NCBIfam PAS domain S-box protein 660 776 IPR000014 -
Hepe08g1551 1166 SUPERFAMILY PYP-like sensor domain (PAS domain) 101 212 IPR035965 -
Hepe08g1551 1166 CDD PAS 797 909 IPR000014 -
Hepe08g1551 1166 SMART pas_2 655 721 IPR000014 -
Hepe08g1551 1166 SMART pas_2 785 855 IPR000014 -
Hepe08g1551 1166 FunFam Phytochrome 438 570 - -
Hepe08g1551 1166 ProSiteProfiles PAS repeat profile. 653 723 IPR000014 -
Hepe08g1551 1166 ProSitePatterns Phytochrome chromophore attachment site signature. 343 352 IPR013516 -
Hepe08g1551 1166 Pfam PAS fold 94 210 IPR013654 GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1551 K12120 - - csv:101219585 1860.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1551 Hepe-Chr8:20894175 Hepe08g1559 Hepe-Chr8:21302735 0.0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0917 . 5 1197 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1455.7
Hepe01g0254 . 21 1006 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1343.9
Hepe02g2600 . 24 984 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1326.6
Hepe02g0293 . 279 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.6e-276 948.7
Hepe03g1107 . 59 1008 Histidine Kinase Gene Family AT2G01830 53.0 3.2e-274 941.8
Hepe08g0395 . 304 1262 Histidine Kinase Gene Family AT2G01830 52.5 4.3e-271 931.4
Hepe01g1937 . 1 996 Histidine Kinase Gene Family AT5G10720 58.3 2.2e-295 1011.9
Hepe08g1559 . 1 1119 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1818.5
Hepe08g1551 . 19 1160 Histidine Kinase Gene Family AT1G09570 70.8 0.0e+00 1615.9
Hepe02g0311 . 18 1110 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1206.4
Hepe05g1374 . 45 1130 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1187.6
Hepe05g1374 . 41 1071 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1657.1
Hepe07g1806 . 24 1046 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1219.1
Hepe02g0311 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.8 0.0e+00 1077.4
Hepe08g1559 . 21 1054 Histidine Kinase Gene Family AT2G18790 52.3 5.4e-312 1067.4
Hepe08g1551 . 45 1094 Histidine Kinase Gene Family AT2G18790 50.3 5.6e-301 1030.8
Hepe02g0311 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1362.8
Hepe05g1374 . 45 1132 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1137.5
Hepe08g1559 . 9 1113 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1114.0
Hepe05g1374 . 41 1132 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1699.5
Hepe07g1806 . 36 1108 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1255.7
Hepe02g0311 . 26 1113 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1114.8
Hepe08g1559 . 8 1114 Histidine Kinase Gene Family AT4G16250 51.8 0.0e+00 1113.2
Hepe07g1806 . 36 1124 Histidine Kinase Gene Family AT4G18130 62.6 0.0e+00 1346.6
Hepe05g1374 . 49 1141 Histidine Kinase Gene Family AT4G18130 58.3 0.0e+00 1263.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56