Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1551 ATGCATGGGAAAGCGGGTAGAAACACAACAGATTGGAGAAGAACAACAACAAATATGTCATCAAGTGGACCAAACCAGTCCTCCACGAACACAGGATCAGGATCCTCATCCTCTTCACAATCAAGACACAGCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTCCATTCCCACTTCGAACAATCCGGTTCTTCTTTCGATTACTCAACAGCTTCAATCCATCTCACAACCAACCCAACATTGTCATCATCAACAACAACAACAGCCACAACAGCATATCTCCAACACATCCAAAAATCCATCCTCATCCAACCCTTTGGCTTCCTCCTAGCCCTCAACCCTACCACCCTCAAACTCGTCGCCTTCAGCCAAAACGCCCCCGACTTCCTCACCGCCGTCTCCCACACCGTCCCCACCGTCCCCAACCACCCCCTCCTCGCCTTCGACACCGACCTCCGTTCCATCTTCACTGCCCCCACCGCCACCGCCCTCATCAAGGCCCTCGCCTTCCCCGACGCCACCCTCCTCAACCCTATTCTCGTTCACTCCAAATCCTCATCCAAGCCCTTCTACGCCATCGTCCACCGCGTCACCGCCAGCCTCGTCATCGACTTCGAGCCCGTCAACCCCGATGAACTTCCCGTCACCGCAGCCGGGGCTCTCCAGTCCTACAAACTCGCAGCCAAAGCCATCACTCGCCTCCAAGCCCTCCCAAGTGGCAGCATGCCCAGGCTTTGTGACACCATGGTTCAAGAAGTCTTTGAGCTCACAGGCTATGATAGGGTTATGGCTTATAAATTTCATGATGATCATCATGGGGAAGTTTTCTCTGAAGTCACTAAACCTGGCCTTGACCCTTATTTGGGTTTGCATTATCCAGCCACAGACATTCCTCAAGCTGCTAGGTTTTTGTTCATGAAAAATAAGGTTAGAATGATTGTGGACTGTAGAGCCAAGCATGTGAAAGTAATTCAAGATCCAAATCTTGATTTTGATTTGACTTTATGTGGGTCCACTTTGAGAGCTCCTCATACTTGCCATTTGCAATACATGGAGAATATGGACTCAATTGCCTCTTTGGTTATGGCAATTGTGGTGAATGAAGAGGAACAAGAGGAATTTGATAATAATAATAATAACAATAATGATGCTTCTTTGCAAAAACACAAGAGGAAAAAATTGTGGGGTTTGGTGGTTTGTCATAATACAACTCCAAGATTTGTTCCTTTTCCTCTAAGGTATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTGAACAAGGAATTGGAATTGGAGAGTCAAATTTTGGAGAAAAATATGTTGAGGACTCAAACACTTTTATGTGACATGTTGATGAGAGATGCTCCTTTAGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAAGAATAAGGTATGGAGATTGGGGATAACTCCTACTGATTTTCATCTTCAAGATATTGCTTCATGGATTTTGGAGAATCATATGGATTCAACTGGTTTGAGTACGGATAGCTTGTATGATGCCGGGTACCCCGGCGCGCTTGCCCTAGGCGACGTGGTGTGTGGGATGGCGGCCGTGAGGATAGCTTCCGACGGCGACATGATCTTCTGGTTCCGATCGCACACCGCGTCGGAGATTCGGTGGGGCGGGGCGAAGCATGAGCCGGGTGAGAAGGATGATGGGAGGAAAATGCATCCTAGGTCATCTTTTAAGGCTTTTCTTGAAGTGGTGAAGACAAGGAGTTTGGGTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAGCTTATACTAAGAAGCACTTTTAAAGATAGTAATAGAGATAGTTTGAGTGAGATTAATGGAAAATCAATACAATCAACACTTAGTGATATGAAGATTGATGGGAGGCAAGAATTGGAATCAGTGACAAGTGAGATGGTGAGGTTGATTGAAACAGCTACAGTTCCAATTTTGGCTGTTGATGTGGATGGGTTAGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTATCTGTTCACAAAGCTATTGGCAACCATTTGCTCACATTAGTGGAAGATTCTTCTCTCGAAATTGTCAACAAGATGTTGTTCTTAGCATTGCAAGGTCAAGAGGAGAAAAACGTCCAATTCGAGATCAAAACACGAGGCTCTAAGCTCGAGTCAGGCTCGATAAGCCTAATAGTAAACGCTTGTGCAAGCAAGGACTTGAGTGAAAACGTTGTGGGAGTATGCTTTGTAGCACAAGACATCACATGTCAAAAGATGGTAATGGACAAATTCACCAAATTACAAGGAGATTACAAAGCCATAGTACAAAACCCTAACCCTTTAATCCCTCCAATATTTGGCCTAGACCAATTTGGTTGGTGCTCAGAGTGGAACTTAGCAATGACAAATCTAAGTGGATGCTCACCTGACCAAGTCTTGAACAAGATGCTTTTAGGAGAGGTTTTTGGTACCCAAAACTCAAGTTCTTGCCATCTAAAGAATCAAGAGGCCTTTGTGAATCTTGGAGTCGTCTTGAACAATGCAATGTCTGGTCAAGATTCTGAAAAGATTTCCTTTGGTTTCTTTGGTAGAAGTGGGATTTATGTCGACTGTATTTTATGTGTCAATAAGATATTAGATAGAGATGGAGGAGTGATTGGAGTTTTTTGCTTCTTGCAACTTGCTAGTCAAGAGCTACAACAAGCTTTGAATGTTCAGAAATTGTGCGAGCGAATTGCGTCGAAGAGATTGAAGACTTTGGGATATATTAAGAGACAGATTCAAAATCCTCTTTGTGGGATTGTATTTTCAAGGAAAATGTTGGAGAGAACTGAGTTGGGAGATGAACAGAAGCAACTTTTGCATAATAGTGTTAACTGTCAAAGACAGATCTCCAAGGTTCTTGATGAGTCTCATGATGATCTTGATAAGATCATTGAAGGTTTGATTGAATTAGAAATGGTTGAGTTTTCATTGCATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAGAGGGAAAGGCATCCATATAGTAAATGAGGTTGCAGAAGAGATCATGTCTGAGACTTTATATGGAGACAATTTGAGACTTCAACAAGTCATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACAGGAGGCCAACTTAGGGTTTCAACAAATTTGACTAAGGATCATTTGGGAAACTCAGTACATCTGGTGCATCTTCAATTCAGGATAACATATGTAGGAGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATGAGGATGCATCTGAAGAAGGCTTCAGCCTATTCATAAGTAGAAAGCTGGTGAAGATGATGAATGGAGATGTGAGATTTGTGAGGGAAGCAGGCAAGTCAAGCTTTATCATAACTGTTGAGCTTGCTGCACCACATAAGTTTAAGAACCTAATAACCTAA 3501 43.16 MHGKAGRNTTDWRRTTTNMSSSGPNQSSTNTGSGSSSSSQSRHSSRILTQTSIDAKLHSHFEQSGSSFDYSTASIHLTTNPTLSSSTTTTATTAYLQHIQKSILIQPFGFLLALNPTTLKLVAFSQNAPDFLTAVSHTVPTVPNHPLLAFDTDLRSIFTAPTATALIKALAFPDATLLNPILVHSKSSSKPFYAIVHRVTASLVIDFEPVNPDELPVTAAGALQSYKLAAKAITRLQALPSGSMPRLCDTMVQEVFELTGYDRVMAYKFHDDHHGEVFSEVTKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDPNLDFDLTLCGSTLRAPHTCHLQYMENMDSIASLVMAIVVNEEEQEEFDNNNNNNNDASLQKHKRKKLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNMLRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKVWRLGITPTDFHLQDIASWILENHMDSTGLSTDSLYDAGYPGALALGDVVCGMAAVRIASDGDMIFWFRSHTASEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLGWKDFEMDAIHSLQLILRSTFKDSNRDSLSEINGKSIQSTLSDMKIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVHKAIGNHLLTLVEDSSLEIVNKMLFLALQGQEEKNVQFEIKTRGSKLESGSISLIVNACASKDLSENVVGVCFVAQDITCQKMVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDQFGWCSEWNLAMTNLSGCSPDQVLNKMLLGEVFGTQNSSSCHLKNQEAFVNLGVVLNNAMSGQDSEKISFGFFGRSGIYVDCILCVNKILDRDGGVIGVFCFLQLASQELQQALNVQKLCERIASKRLKTLGYIKRQIQNPLCGIVFSRKMLERTELGDEQKQLLHNSVNCQRQISKVLDESHDDLDKIIEGLIELEMVEFSLHEVLVVSISQVMMKSRGKGIHIVNEVAEEIMSETLYGDNLRLQQVMADFLLISVNYAPTGGQLRVSTNLTKDHLGNSVHLVHLQFRITYVGGGIPESLLNEMFGNDEDASEEGFSLFISRKLVKMMNGDVRFVREAGKSSFIITVELAAPHKFKNLIT 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20894175 20903327 - Hsped.08g15510.1 Hepe08g1551 577523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1551 1166 PRINTS Phytochrome signature 258 277 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 549 568 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 158 180 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 675 690 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 463 483 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 582 600 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 343 364 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 768 788 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 656 672 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 PRINTS Phytochrome signature 748 765 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 SUPERFAMILY PYP-like sensor domain (PAS domain) 800 907 IPR035965 -
Hepe08g1551 1166 CDD PAS 664 770 IPR000014 -
Hepe08g1551 1166 FunFam Phytochrome 649 780 - -
Hepe08g1551 1166 Pfam PAS fold 786 909 IPR013767 GO:0006355(InterPro)
Hepe08g1551 1166 Pfam PAS fold 656 770 IPR013767 GO:0006355(InterPro)
Hepe08g1551 1166 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 243 423 IPR016132 -
Hepe08g1551 1166 Coils Coil 369 389 - -
Hepe08g1551 1166 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1045 1155 IPR003594 -
Hepe08g1551 1166 MobiDBLite consensus disorder prediction 10 46 - -
Hepe08g1551 1166 Gene3D PAS domain 99 346 - -
Hepe08g1551 1166 SMART HKATPase_4 1045 1157 IPR003594 -
Hepe08g1551 1166 SMART gaf_1 243 443 IPR003018 GO:0005515(InterPro)
Hepe08g1551 1166 Pfam Phytochrome region 446 621 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1551 1166 Pfam GAF domain 246 432 IPR003018 GO:0005515(InterPro)
Hepe08g1551 1166 SUPERFAMILY PYP-like sensor domain (PAS domain) 659 766 IPR035965 -
Hepe08g1551 1166 SUPERFAMILY GAF domain-like 441 619 - -
Hepe08g1551 1166 PANTHER OS08G0260000 PROTEIN 28 1034 - -
Hepe08g1551 1166 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 991 1153 IPR036890 -
Hepe08g1551 1166 MobiDBLite consensus disorder prediction 1 46 - -
Hepe08g1551 1166 Gene3D - 438 612 IPR043150 -
Hepe08g1551 1166 ProSiteProfiles PAS repeat profile. 786 842 IPR000014 -
Hepe08g1551 1166 Coils Coil 430 450 - -
Hepe08g1551 1166 Gene3D PAS domain 648 784 - -
Hepe08g1551 1166 PIRSF Phytochrome_conventional 24 1163 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Hepe08g1551 1166 Gene3D - 224 595 IPR029016 -
Hepe08g1551 1166 ProSiteProfiles Histidine kinase domain profile. 938 1157 IPR005467 -
Hepe08g1551 1166 SUPERFAMILY GAF domain-like 223 430 - -
Hepe08g1551 1166 CDD HATPase_Phy-like 1044 1155 IPR044767 -
Hepe08g1551 1166 Gene3D - 996 1159 IPR036890 -
Hepe08g1551 1166 NCBIfam PAS domain S-box protein 660 776 IPR000014 -
Hepe08g1551 1166 SUPERFAMILY PYP-like sensor domain (PAS domain) 101 212 IPR035965 -
Hepe08g1551 1166 CDD PAS 797 909 IPR000014 -
Hepe08g1551 1166 SMART pas_2 655 721 IPR000014 -
Hepe08g1551 1166 SMART pas_2 785 855 IPR000014 -
Hepe08g1551 1166 FunFam Phytochrome 438 570 - -
Hepe08g1551 1166 ProSiteProfiles PAS repeat profile. 653 723 IPR000014 -
Hepe08g1551 1166 ProSitePatterns Phytochrome chromophore attachment site signature. 343 352 IPR013516 -
Hepe08g1551 1166 Pfam PAS fold 94 210 IPR013654 GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1551 Hepe-Chr8:20894175 Hepe08g1559 Hepe-Chr8:21302735 0.0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1551 K12120 - csv:101219585 1860.5