Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1558 ATGGATCCACCCACTCTGATGAACGAAGGGTCATTTCCAAATAACGCTAATGCCAATGTCAATGCCAATGTCTCTCCCTACAATCTCTCAGAGATCTGGCACTTCCCAATTAATGGCGGAACCTCCCTTGATGAATCTGGTGGTGGACTCGCCTTGAGGATGGCTCAGTTCGCTCATGATTTGGGGCAGTTTGGAGAGATTGCCTTGGCGAATCGAGAAGTAGTACCACCTCATCCTCATGCCCATGGTGCTAATTCCAAGAAGCGGCGTGATGCAGAGCAAGATTCAGCTGCCAAGGTCAGTTCCACCGGCAATGGCGGCAACAATGCCAATAGCGGCGCCACGAATGACTCTGGTGGAAAACGCCTTAAAACAGCTGCGTGTAGAGATGATAATCACGAATCCAAAACAGAAGCAGAAGCCAGATCTGGCAAGGCCGAGCAGAACTCCCAGCCCCCACCAGAACAACCCAAACTGGATTACATTCATGTGCGAGCAAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCTGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAACTCTACAGGATTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCGCTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATACGAGAGCTAGTCCTGGCATCGAAGTGTTTCCTCCTAAAGATTATGGTCAACAGGCATTCGATACAACTGGTGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCAGAATGGCTGCATATGCAGATCGGTGGCGGTTTCGAAAGAACGACGTAG 876 47.83 MDPPTLMNEGSFPNNANANVNANVSPYNLSEIWHFPINGGTSLDESGGGLALRMAQFAHDLGQFGEIALANREVVPPHPHAHGANSKKRRDAEQDSAAKVSSTGNGGNNANSGATNDSGGKRLKTAACRDDNHESKTEAEARSGKAEQNSQPPPEQPKLDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRASPGIEVFPPKDYGQQAFDTTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTT 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21104652 21107167 + Hsped.08g15580.1 Hepe08g1558 577530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1558 291 SMART finulus 176 226 IPR011598 GO:0046983(InterPro)
Hepe08g1558 291 FunFam Basic helix-loop-helix transcription factor 167 239 - -
Hepe08g1558 291 Coils Coil 217 237 - -
Hepe08g1558 291 CDD bHLH_AtBPE_like 160 245 - -
Hepe08g1558 291 MobiDBLite consensus disorder prediction 76 157 - -
Hepe08g1558 291 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983(InterPro)
Hepe08g1558 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 236 IPR036638 GO:0046983(InterPro)
Hepe08g1558 291 MobiDBLite consensus disorder prediction 123 143 - -
Hepe08g1558 291 Gene3D - 167 240 IPR036638 GO:0046983(InterPro)
Hepe08g1558 291 MobiDBLite consensus disorder prediction 97 119 - -
Hepe08g1558 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983(InterPro)
Hepe08g1558 291 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 86 245 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1558 Hepe-Chr8:21104652 Hepe10g1832 Hepe-Chr10:55051312 1.35e-37 dispersed
Hepe09g0154 Hepe-Chr9:1222942 Hepe08g1558 Hepe-Chr8:21104652 1.06e-79 transposed
Hepe05g1121 Hepe-Chr5:55294306 Hepe08g1558 Hepe-Chr8:21104652 6.72e-23 wgd
Hepe05g0900 Hepe-Chr5:34467782 Hepe08g1558 Hepe-Chr8:21104652 1.27e-13 wgd
Hepe08g1558 Hepe-Chr8:21104652 Hepe09g1288 Hepe-Chr9:17812091 6.53e-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56232 PF00010 HLH 1.20E-08 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1558 - - - 0.0