Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1559 ATGTCTTCCTCTAGACCTAGCCAGTCCTCTAGCAACTCTGGGCGGTCAAGACATAGCACCAGAATTATTGCTCAAACTTCTGTTGATGCGAAGCTCCAAGCAGATTTTGAGGAATCTGGGAATTCATTCGACTACTCAAGTTCAGTGCGTGTCACTGGTGAGGTTAGCGGAGATCAACAACCTAGGTCGGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATCCAACCATTTGGTTCCTTATTGGCCTTAGATGACAAAACATTCAAGGTTATTGCATATAGTGAAAATGCCCCCGAAATGTTGACCATGGTGAGCCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGAACAGACGTAAGGACTATTTTCACTGCACCTAGTGCATCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACACTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCTGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCCGCCAAAGCAATTACTAAATTGCAGGCTTTGCCCAGTGGGAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCCGGCCTTGAGCCATATCTTGGTTTGCATTATCCGGCCACTGACATTCCTCAAGCTGCACGCTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTTGATTGTCGTGCAAAACATTTAAAAGTACTGCAAGATGAGAAATTACAGCTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACATAGTTGCCATATACAGTATATGGAGAACATGAACACTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGCTTGGTAGTATGTCACAATTCAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCACAAGTATTTGCTATTCACGTGAACAAGGAACTAGAGTTGGAAAATCAAATTATCGAAAAAAATATTCTGCGTACACAGACACTCTTGTGCGACATGCTAATGCGTGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATCAGAACAAAATTTGGCGTTTAGGAATAACACCTAGTGACTTCCAGTTGCGGGACATTTCCTCATGGCTTTCGGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATACCCGGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCAGCTGTGAGGATATCTAATAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCTGAGATTCGATGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGACAATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTCTGCCTTGGAAGGACTATGAAATGGATGCAATCCACTCTTTGCAACTTATCCTCAGAAATACTTTTAAAGATACAGATACAACTGAAGTAAATAGAAAATCAATTCAAGTGACACTTAGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCTGTAACGAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTTAGTTAATGGGTGGAACACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTAGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTCGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACGCATGGTTCTCATATTGAGGTTGGCTCCATCAGCCTAGTTGTAAATGCTTGTGCAAGTAGGGACTTGCATGAAAATGTTGTAGGAGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGCGATTACAAAGCTATTGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGGCAAAATTAACTGGATGGTCACGTGAAGAAGTAATCGATAAGATGCTTTTGGGAGAGGTTTTTGGTGCTCAAAAATCATGTTGTCGTTTAAAGAATCAAGAAACTTTTGTTAATCTTGGGGTTGTTTTGAATAATGCCATGACTGGTCAAGATCCTGAAAAGGTTTCCTTTGGTTTCCTCGCTCGGAGCGGGATGTACGTGGAGTGTCTTCTATGCATCAATAAGATCTTGGATAAAGACGGGGTGGTTACAGGGGTTTTTTGCTTTTTGCAGCTTGCTAGTCACGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAAACTGCATTGAAGAGATTGAGAGCATTGGGATACATGAAAAGGCAGATAGAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAGCGCACTGGGATGGAAATAGAACAAAAAAAAATTCTGCATACTAGCGCACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCGGACCTTGATAAAATTATTGATGGGTTCATTGATCTGGAAATGATCGAGTTTACATTGCATGAAGTATTGACGGTATCGATTAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTTAATGAGACTGCACAAGAGGCCATGTCCGAGACCTTATATGGAGATAGCTTGAGGCTTCAACAAGTTTTGGCAGATTTTCTATTGGTATCAGTTAGTAATGCACCAGCAGGAGGCCAACTAACAATTTCAACCAGCTTTACCAAGGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTGGAGTTCAGGATCACGTATGCCGGAGGAGGCATACCAGAGTCGTTGCTGAACGAGATGTTTGGTAGCGAGGAGGCATCCGAGGAGGGTTTTAGTCTACTCATCAGCAGGAAACTGGTGAAGCTGATGAACGGAGATGTACGTTATATGAGGGAAGCAGGTAAGTCGAGCTTTATCATAACTGTTGAGCTTGCTGCAGCACACAAGACAACAAGAACGTAG 3372 42.02 MSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVTGEVSGDQQPRSDKVTTAYLHHIQKGKLIQPFGSLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITKLQALPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQLDLTLCGSTLRAPHSCHIQYMENMNTIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNSSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYQNKIWRLGITPSDFQLRDISSWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRISNNDMIFWFRSHTASEIRWGGAKHEHGEKDNGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTTEVNRKSIQVTLSDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLPVDKAISKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLHENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMAKLTGWSREEVIDKMLLGEVFGAQKSCCRLKNQETFVNLGVVLNNAMTGQDPEKVSFGFLARSGMYVECLLCINKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYMKRQIENPLSGIIFSRRLLERTGMEIEQKKILHTSAHCQKQISKVLEESDLDKIIDGFIDLEMIEFTLHEVLTVSISQVMIKSKGKGIQIVNETAQEAMSETLYGDSLRLQQVLADFLLVSVSNAPAGGQLTISTSFTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKTTRT 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21302735 21309886 + Hsped.08g15590.1 Hepe08g1559 577531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1559 1123 SMART pas_2 618 684 IPR000014 -
Hepe08g1559 1123 SMART pas_2 748 817 IPR000014 -
Hepe08g1559 1123 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Hepe08g1559 1123 Pfam PAS fold 749 871 IPR013767 GO:0006355(InterPro)
Hepe08g1559 1123 Pfam PAS fold 619 733 IPR013767 GO:0006355(InterPro)
Hepe08g1559 1123 NCBIfam PAS domain S-box protein 623 739 IPR000014 -
Hepe08g1559 1123 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Hepe08g1559 1123 CDD PAS 627 733 IPR000014 -
Hepe08g1559 1123 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 390 IPR016132 -
Hepe08g1559 1123 Gene3D PAS domain 611 748 - -
Hepe08g1559 1123 SMART gaf_1 218 410 IPR003018 GO:0005515(InterPro)
Hepe08g1559 1123 MobiDBLite consensus disorder prediction 1 24 - -
Hepe08g1559 1123 Gene3D - 405 578 IPR043150 -
Hepe08g1559 1123 PANTHER OS08G0260000 PROTEIN 1 995 - -
Hepe08g1559 1123 FunFam Phytochrome 405 536 - -
Hepe08g1559 1123 SMART HKATPase_4 1005 1116 IPR003594 -
Hepe08g1559 1123 Gene3D - 961 1122 IPR036890 -
Hepe08g1559 1123 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Hepe08g1559 1123 CDD HATPase_Phy-like 1004 1114 IPR044767 -
Hepe08g1559 1123 Pfam Phytochrome region 413 587 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1559 1123 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1559 1123 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1559 1123 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1559 1123 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1559 1123 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1559 1123 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1559 1123 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1559 1123 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1559 1123 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1559 1123 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe08g1559 1123 ProSiteProfiles Histidine kinase domain profile. 900 1118 IPR005467 -
Hepe08g1559 1123 SUPERFAMILY GAF domain-like 198 397 - -
Hepe08g1559 1123 PIRSF Phytochrome_conventional 1 1123 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Hepe08g1559 1123 Coils Coil 397 417 - -
Hepe08g1559 1123 FunFam Phytochrome 612 743 - -
Hepe08g1559 1123 Pfam PAS fold 69 185 IPR013654 GO:0006355(InterPro)
Hepe08g1559 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Hepe08g1559 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Hepe08g1559 1123 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1005 1114 IPR003594 -
Hepe08g1559 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Hepe08g1559 1123 SUPERFAMILY GAF domain-like 408 585 - -
Hepe08g1559 1123 Gene3D PAS domain 763 877 - -
Hepe08g1559 1123 Gene3D PAS domain 74 321 - -
Hepe08g1559 1123 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1111 IPR036890 -
Hepe08g1559 1123 CDD PAS 760 871 IPR000014 -
Hepe08g1559 1123 Pfam GAF domain 220 399 IPR003018 GO:0005515(InterPro)
Hepe08g1559 1123 Gene3D - 199 561 IPR029016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1559 K12120 - - csv:101208491 2061.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0311 Hepe-Chr2:2965160 Hepe08g1559 Hepe-Chr8:21302735 0.0 dispersed
Hepe07g1806 Hepe-Chr7:60786622 Hepe08g1559 Hepe-Chr8:21302735 0.0 dispersed
Hepe08g1551 Hepe-Chr8:20894175 Hepe08g1559 Hepe-Chr8:21302735 0.0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0917 . 5 1197 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1455.7
Hepe01g0254 . 21 1006 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1343.9
Hepe02g2600 . 24 984 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1326.6
Hepe02g0293 . 279 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.6e-276 948.7
Hepe03g1107 . 59 1008 Histidine Kinase Gene Family AT2G01830 53.0 3.2e-274 941.8
Hepe08g0395 . 304 1262 Histidine Kinase Gene Family AT2G01830 52.5 4.3e-271 931.4
Hepe01g1937 . 1 996 Histidine Kinase Gene Family AT5G10720 58.3 2.2e-295 1011.9
Hepe08g1559 . 1 1119 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1818.5
Hepe08g1551 . 19 1160 Histidine Kinase Gene Family AT1G09570 70.8 0.0e+00 1615.9
Hepe02g0311 . 18 1110 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1206.4
Hepe05g1374 . 45 1130 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1187.6
Hepe05g1374 . 41 1071 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1657.1
Hepe07g1806 . 24 1046 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1219.1
Hepe02g0311 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.8 0.0e+00 1077.4
Hepe08g1559 . 21 1054 Histidine Kinase Gene Family AT2G18790 52.3 5.4e-312 1067.4
Hepe08g1551 . 45 1094 Histidine Kinase Gene Family AT2G18790 50.3 5.6e-301 1030.8
Hepe02g0311 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1362.8
Hepe05g1374 . 45 1132 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1137.5
Hepe08g1559 . 9 1113 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1114.0
Hepe05g1374 . 41 1132 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1699.5
Hepe07g1806 . 36 1108 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1255.7
Hepe02g0311 . 26 1113 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1114.8
Hepe08g1559 . 8 1114 Histidine Kinase Gene Family AT4G16250 51.8 0.0e+00 1113.2
Hepe07g1806 . 36 1124 Histidine Kinase Gene Family AT4G18130 62.6 0.0e+00 1346.6
Hepe05g1374 . 49 1141 Histidine Kinase Gene Family AT4G18130 58.3 0.0e+00 1263.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56