Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1574 ATGAAGAGTGATGGCTGGAGGCGAGCAAACAGTAGCGTTGGCAACGTCGGAAAAGAGCCTACTGATGATGATGAATATTGGCAGAATCGTGCCGTCGAAGCTAAGAAGGTTGCTCAAGATGCCTATAATCCCAATCCGGAAGCTGTTACCGAAAACTTCAACGATGCTGTCGGCAGGGAGCTGTTGGGCAGCAACAGTACGAGAAGGAGCCTGAAGAAATACAAAGGTCCATGCTTGGCCACGAACCCGATCGATCGATGCTGGAGATGCGATCAAAACTGGGCCACCAACCGAAAGAAGCTAGCTGAATGCCCATTGGGGTTCGGCCACAAGACGATTGGCGGAAAGAGGGGGCCAATCTATGTGGTGACAGACGCCTCTGACAACGACCTGTTGAACCCGAAACCTGGAACCCTGCGCCACGCCGTCATCCAAAAAGGACCACTTTGGATCATCTTCGGGCGCAGCATGATCATCCAGCTCACCGAAGAGCTGATGATCTCAAGCAACAAAACCATCGACGGTCGTGGCGCGAATGTCCACATTGCCTTCGGCGCCGGCCTCACCATTCAGTTTGTCAACAATGTCATCATACATGGGATTCACGTCCATGATATCATTTCCAAACCTGGGGGAATGATTAGAGATTCTGTTGATCATTATGGGTTTAGGACTGTGAGTGATGGCGATGGCATCTCCATCTTTGGCGGCTCTCATGTTTGGATTGATCATGTTTCCATGTACAATTGCCAAGATGGCATCATCGATGCCATCATGGGTTCAACGGCCATCACCATCTCAAACTCTCATTTCACTCACCACAACGAGGTGATGTTGTTCGGCGCGAGTGATAGTTATTCCGAAGACAAGGTTATGCAAATAACCCTTGCATTCAACCACTTTGGTAGGGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATGTGGTTAATAATGACTACACCCATTGGCTTATGTATGCCATTGGTGGTAGCCAACATCCCACCATCCTTAGCCAAGGAAACCGTTTCTTTGCACCTCCTAACCCTAATGCAAAAGAGATAACAAAGAGAGATTATGCACTGGAGAGCGAATGGAAAAACTGGTCATGGAAATCAGAGGGAGATTTGATGGTGAATGGAGCCCACTTTTCTTCATCGGGAGACCAAAGCAAAAGCCATACAAAAGCATTCTCAAGATATGAAATGATTACGTTCAAGCCAGGAACTTACGTCAAGAGACTTACACGCTTCTCTGGCACACTTGAATGCCGCATAGGCAAACCGTGCTAG 1302 48.54 MKSDGWRRANSSVGNVGKEPTDDDEYWQNRAVEAKKVAQDAYNPNPEAVTENFNDAVGRELLGSNSTRRSLKKYKGPCLATNPIDRCWRCDQNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDNDLLNPKPGTLRHAVIQKGPLWIIFGRSMIIQLTEELMISSNKTIDGRGANVHIAFGAGLTIQFVNNVIIHGIHVHDIISKPGGMIRDSVDHYGFRTVSDGDGISIFGGSHVWIDHVSMYNCQDGIIDAIMGSTAITISNSHFTHHNEVMLFGASDSYSEDKVMQITLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTILSQGNRFFAPPNPNAKEITKRDYALESEWKNWSWKSEGDLMVNGAHFSSSGDQSKSHTKAFSRYEMITFKPGTYVKRLTRFSGTLECRIGKPC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22341687 22345453 - Hsped.08g15740.1 Hepe08g1574 577546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1574 433 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Hepe08g1574 433 PRINTS Pollen allergen Amb family signature 164 180 IPR018082 -
Hepe08g1574 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
Hepe08g1574 433 PRINTS Pollen allergen Amb family signature 372 396 IPR018082 -
Hepe08g1574 433 PRINTS Pollen allergen Amb family signature 104 121 IPR018082 -
Hepe08g1574 433 PRINTS Pollen allergen Amb family signature 128 153 IPR018082 -
Hepe08g1574 433 PRINTS Pollen allergen Amb family signature 228 249 IPR018082 -
Hepe08g1574 433 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Hepe08g1574 433 Gene3D - 81 426 IPR012334 -
Hepe08g1574 433 MobiDBLite consensus disorder prediction 1 17 - -
Hepe08g1574 433 SUPERFAMILY Pectin lyase-like 82 423 IPR011050 -
Hepe08g1574 433 SMART amb_all 156 353 IPR002022 -
Hepe08g1574 433 MobiDBLite consensus disorder prediction 1 25 - -
Hepe08g1574 433 Pfam Pectate lyase, N terminus 24 71 IPR007524 GO:0030570(InterPro)
Hepe08g1574 433 PANTHER PECTATE LYASE 18-RELATED 39 430 IPR045032 GO:0030570(InterPro)
Hepe08g1574 433 Pfam Pectate lyase 164 347 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1942 Hepe-Chr2:33299107 Hepe08g1574 Hepe-Chr8:22341687 2.35e-220 dispersed
Hepe02g1944 Hepe-Chr2:33368154 Hepe08g1574 Hepe-Chr8:22341687 2.14e-223 dispersed
Hepe03g2009 Hepe-Chr3:77378083 Hepe08g1574 Hepe-Chr8:22341687 2.21e-311 dispersed
Hepe07g2170 Hepe-Chr7:65960580 Hepe08g1574 Hepe-Chr8:22341687 9.98e-164 dispersed
Hepe07g2538 Hepe-Chr7:69842734 Hepe08g1574 Hepe-Chr8:22341687 9.22e-75 dispersed
Hepe08g1574 Hepe-Chr8:22341687 Hepe10g0060 Hepe-Chr10:582201 2.23e-170 dispersed
Hepe08g1574 Hepe-Chr8:22341687 Hepe02g1895 Hepe-Chr2:30933475 1.43e-223 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1574 K01728 - csv:101217922 726.857