Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1597 ATGCTGCGTCTTCAATGGCTTTCTTCTTCATTGCTATCGCCATTAAACCCCGAGCTCTCGCCGGAACCCTGTTCGAACCGCAGACTATCTAGCCTCAACTCCTCTCGCCCACTCCTCACTCTCACCACTACACGAAAACCTTCTCCGAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCCGGCCTTCGAACCAGGCTCACAGCCTGATTCATTTTCCCAACAAGCTCGCGCCGGAGCTGCTGCAGCATTACCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAACCTAAGCCACCAGAGTTTACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGAATTGTATTGCTTCAGTTTGCCCCTGCGGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCACGGGAGTCTTGTGAATTTTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAACCTCTTCCAGATGGTTCTGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACATGGATGAGAGCATTTATATTCCCATCACCAAAGGAGAGTATACTGTACTTGTCGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCGAACAGCATCATGAGGCCTGAAGATAGCAGCCGAACAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAGCAGATAG 822 47.69 MLRLQWLSSSLLSPLNPELSPEPCSNRRLSSLNSSRPLLTLTTTRKPSPKCQYSWNTQQQQQPAFEPGSQPDSFSQQARAGAAAALPPRFFVGHSIYKGKAALTVEPKPPEFTPLDSGAFKISREGIVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANSIMRPEDSSRTNNANPRYGGDFEWSR 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23005597 23009706 + Hsped.08g15970.1 Hepe08g1597 577569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1597 273 MobiDBLite consensus disorder prediction 252 273 - -
Hepe08g1597 273 MobiDBLite consensus disorder prediction 16 77 - -
Hepe08g1597 273 SUPERFAMILY ssDNA-binding transcriptional regulator domain 88 273 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe08g1597 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 36 273 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Hepe08g1597 273 MobiDBLite consensus disorder prediction 16 79 - -
Hepe08g1597 273 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 81 257 - -
Hepe08g1597 273 Gene3D Transcriptional Coactivator Pc4; Chain A 81 254 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe08g1597 273 Pfam Whirly transcription factor 96 230 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1597 K26559 - - csv:101203474 435.261
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0241 Hepe-Chr6:8796840 Hepe08g1597 Hepe-Chr8:23005597 2.61e-49 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1597 . 46 273 Whirly Transcription Factor Family AT1G14410 68.4 3.2e-90 328.6
Hepe06g0241 . 58 215 Whirly Transcription Factor Family AT1G71260 65.2 3.8e-58 221.9
Hepe08g1597 . 49 273 Whirly Transcription Factor Family AT2G02740 69.0 1.1e-88 323.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56236 PF08536 Whirly 2.80E-60 CL0609 Hepe TF