Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1597 ATGCTGCGTCTTCAATGGCTTTCTTCTTCATTGCTATCGCCATTAAACCCCGAGCTCTCGCCGGAACCCTGTTCGAACCGCAGACTATCTAGCCTCAACTCCTCTCGCCCACTCCTCACTCTCACCACTACACGAAAACCTTCTCCGAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCCGGCCTTCGAACCAGGCTCACAGCCTGATTCATTTTCCCAACAAGCTCGCGCCGGAGCTGCTGCAGCATTACCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAACCTAAGCCACCAGAGTTTACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGAATTGTATTGCTTCAGTTTGCCCCTGCGGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCACGGGAGTCTTGTGAATTTTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAACCTCTTCCAGATGGTTCTGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACATGGATGAGAGCATTTATATTCCCATCACCAAAGGAGAGTATACTGTACTTGTCGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCGAACAGCATCATGAGGCCTGAAGATAGCAGCCGAACAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAGCAGATAG 822 47.69 MLRLQWLSSSLLSPLNPELSPEPCSNRRLSSLNSSRPLLTLTTTRKPSPKCQYSWNTQQQQQPAFEPGSQPDSFSQQARAGAAAALPPRFFVGHSIYKGKAALTVEPKPPEFTPLDSGAFKISREGIVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANSIMRPEDSSRTNNANPRYGGDFEWSR 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23005597 23009706 + Hsped.08g15970.1 Hepe08g1597 577569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1597 273 MobiDBLite consensus disorder prediction 252 273 - -
Hepe08g1597 273 MobiDBLite consensus disorder prediction 16 77 - -
Hepe08g1597 273 SUPERFAMILY ssDNA-binding transcriptional regulator domain 88 273 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe08g1597 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 36 273 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Hepe08g1597 273 MobiDBLite consensus disorder prediction 16 79 - -
Hepe08g1597 273 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 81 257 - -
Hepe08g1597 273 Gene3D Transcriptional Coactivator Pc4; Chain A 81 254 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe08g1597 273 Pfam Whirly transcription factor 96 230 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0241 Hepe-Chr6:8796840 Hepe08g1597 Hepe-Chr8:23005597 2.61e-49 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56236 PF08536 Whirly 2.80E-60 CL0609 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1597 K26559 - csv:101203474 435.261