Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1600 ATGCGCAGACATCGATGGACGGGACGATTCGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGGAAGCAAGGAGCTTATGATGAAGAAGAATCAGCTGCTCGAGCTTATGACTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACTAATTTCCCGGTATGTGAGTATGAGAAAGAAGTTAAGATAATGAAAACTGTGACAAAGGAGGAATACTTGGCCTCTTTAAGAAGGAGAAGCAGTGGCTTCTCTAGAGGTGTATCCAAATATCGAGGCGTCGCCAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTATTTGGGAACAAGTATTTGTACCTTGGAACTTACAGTACACAAGAGGAGGCAGCAAGGGCATATGACATAGCAGCAATAGAATACAGAGGCATAAACGCAGTGACCAACTTCGAGCTCAGCACTTACATAAAATGGCTTAAACCCCAACACCACCCCATCCCAAAACAACCCAATTCTCCACCATTATCCTTCTCAATTACCCCACAATCTCATCCCCATTTAATTCCTATCTCCCAACCCATCACTAATAATACCAATACTATTATTCCCACTGCCCCACAAACCTCGGACACCAGTACCTCTCGCACAGCCCTTGGCCTCCTCCTCAAGTCCTCCCTCTTCAAACACCTTGTCCAAAACAACCTCCACAATGCCCTAAGTGAAGAGGACCACCCCAACAAAGATGAACCCAGAGGGCTGCTTTCTGATCCTAATCCTTACTTGCACTTGCACTATCCGTGTCAAGGAACGAGCAGCACCTTGTCGCTATGCAACCCATTTCCTTATTTCGGCTACTGA 867 46.25 MRRHRWTGRFEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVCEYEKEVKIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFELSTYIKWLKPQHHPIPKQPNSPPLSFSITPQSHPHLIPISQPITNNTNTIIPTAPQTSDTSTSRTALGLLLKSSLFKHLVQNNLHNALSEEDHPNKDEPRGLLSDPNPYLHLHYPCQGTSSTLSLCNPFPYFGY 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23033301 23045109 + Hsped.08g16000.1 Hepe08g1600 577572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1600 288 SUPERFAMILY DNA-binding domain 95 156 IPR016177 GO:0003677(InterPro)
Hepe08g1600 288 Gene3D AP2/ERF domain 95 156 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1600 288 Gene3D AP2/ERF domain 1 62 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1600 288 FunFam AP2-like ethylene-responsive transcription factor 95 156 - -
Hepe08g1600 288 CDD AP2 2 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1600 288 ProSiteProfiles AP2/ERF domain profile. 1 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1600 288 CDD AP2 95 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1600 288 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 174 - -
Hepe08g1600 288 SMART rav1_2 96 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1600 288 SMART rav1_2 2 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1600 288 SUPERFAMILY DNA-binding domain 2 61 IPR016177 GO:0003677(InterPro)
Hepe08g1600 288 ProSiteProfiles AP2/ERF domain profile. 96 154 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1600 288 Pfam AP2 domain 95 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1946 Hepe-Chr2:33659694 Hepe08g1600 Hepe-Chr8:23033301 3.66e-104 dispersed
Hepe08g1600 Hepe-Chr8:23033301 Hepe08g1835 Hepe-Chr8:45654109 4.82e-74 dispersed
Hepe03g1680 Hepe-Chr3:73627979 Hepe08g1600 Hepe-Chr8:23033301 9.28e-91 transposed
Hepe09g0546 Hepe-Chr9:5155113 Hepe08g1600 Hepe-Chr8:23033301 7.97e-96 transposed
Hepe07g1219 Hepe-Chr7:30453231 Hepe08g1600 Hepe-Chr8:23033301 1.31e-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56237 PF00847 AP2 5.10E-12 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1600 - - - 0.0