Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1603 ATGTCATCATCGCTCTGTTCGTCAATTCGGCCATTGGCGTCGCACTACTGGCGCCGGAAGAACTTGAGATTCTCCATTTTGCTTCATTCCAAGAGATCTATATGCTTTGCGGCGCCTCGCTTCGTTGCTTGCTTCAACAACGACGACTCTGTTGCAATCCCCAGACCTGCGCCGCTGGCCTTCGACCCTGCGGAGGAGCTGTACGGACTTGGCGTCGATTTGAAACCGAGGAATTCAGCTTCTAGCGCACCTGAACCCAGGTCCTGGTTTGGCCCAAATGGTCAGTATATTAAAGAGCTGCCATGTCCAAGTTGTCGAGGTAGGGGCTATGCGCCCTGTACGGAATGTGGAATCGAAAGATCTCGTGCAGACTGTTCCGTGTGTAATGGGAAGGGTATGGTGACTTGCCACCAATGTTTGGGAGATCGTGTCATATGGGAAGAGTCCATTGATGAACGACCATGGGAGAAAGCACGTTCCACTTCTCCATTAAGAATGAAGGAAGATGAGGAAGTCGATAACTTGGAAATAAAGCTGGAAGAAAAGAAGAAATCGAAGCGTGTTTACCAATCACCTCCTCCTGAAGTTGGTTTAAAGATCAGTCGATCATTAAAAAGCCTCAATGCCAAAACAGGTCTATTTAGTAAGAGAATGAAGATTATCCATCGTGACCCCGCTCTTCATGCTCAGAGAGTGGCTGCAATTAAGAAAGCCAAAGGAAGTGCTGAAGCAAGAAAACATACTTCTGAAGCTTTGAAAGCGTTCTTTAGCGATCCAGAAAATCGTCGAAAGCGGAGCATTGCAATGAAAGGGGTGAAGTTTTACTGTAAAATCTGCGGACGAGAGGGGCATCGAAGACACTATTGTCCAGAACTTAAGGAAGATTCCATTGATAGGCGATTCAGATGTCGAGTATGTGGAGAGAAGGGCCATAACAGAAGGACCTGTATGAAGAGGCTGAATAGTAAACCGATCAGCGCAACAATTCAGCGTCATTGTGGGGTATGTGGTGTGACGGGCCACAACAGGAGGAACTGTCCGAAGTCCGATTGTCAGAACCGTCGCAGCGGGTTGAGCCTGAATTTGATCAATGAAGATAGGATGGCTAATCAAAACAGGAGAGTGAGGCAGTATCATTGTAGGATCTGCAATAAAAATGGTCACAATCGGCGGAACTGTCCCGATATCAATAGAAAAGGTAACCGTACAAGTCCTAGAAGAACACACACCTGCAAACTATGCTATGAAAAAGGGCATAATAGTAGAACATGCCCAAGTAGAAATGTGAACAATCTACATAAAAGTCCTCCAGTCGCTATCAACCAATGA 1329 46.43 MSSSLCSSIRPLASHYWRRKNLRFSILLHSKRSICFAAPRFVACFNNDDSVAIPRPAPLAFDPAEELYGLGVDLKPRNSASSAPEPRSWFGPNGQYIKELPCPSCRGRGYAPCTECGIERSRADCSVCNGKGMVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDEEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPALHAQRVAAIKKAKGSAEARKHTSEALKAFFSDPENRRKRSIAMKGVKFYCKICGREGHRRHYCPELKEDSIDRRFRCRVCGEKGHNRRTCMKRLNSKPISATIQRHCGVCGVTGHNRRNCPKSDCQNRRSGLSLNLINEDRMANQNRRVRQYHCRICNKNGHNRRNCPDINRKGNRTSPRRTHTCKLCYEKGHNSRTCPSRNVNNLHKSPPVAINQ 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23201521 23208880 + Hsped.08g16030.1 Hepe08g1603 577575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1603 442 Gene3D - 362 432 - -
Hepe08g1603 442 SUPERFAMILY Retrovirus zinc finger-like domains 370 428 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1603 442 SUPERFAMILY Retrovirus zinc finger-like domains 273 319 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1603 442 Coils Coil 165 185 - -
Hepe08g1603 442 ProSiteProfiles Zinc finger CCHC-type profile. 333 348 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1603 442 ProSiteProfiles Zinc finger CCHC-type profile. 276 291 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1603 442 ProSiteProfiles Zinc finger CCHC-type profile. 302 316 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1603 442 SMART c2hcfinal6 410 426 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1603 442 SMART c2hcfinal6 332 348 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1603 442 SMART c2hcfinal6 302 318 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1603 442 SMART c2hcfinal6 379 395 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1603 442 SMART c2hcfinal6 275 291 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe08g1603 442 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 94 350 IPR051714 GO:0003727(PANTHER)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0045182(PANTHER)|GO:2000767(PANTHER)
Hepe08g1603 442 Gene3D - 273 324 - -
Hepe08g1603 442 ProSiteProfiles Zinc finger CCHC-type profile. 380 395 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1603 - - - 0.0