Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1610 ATGTCGATCTCTTCTTCTTCCGACTGCTTCATTGACTCTCACTTACTCTGTGACGAGGATTCCTCCGGTATTTTGTCTGGAGACTCGCCGGATTACTCCTCCGACTTTGAATCACCCGCCAGTACCGAGGATTCTATCGCCAGTTTCATAGAGGACGAGAGGCACTTCGTTCCTGGGATTGATTACTTGTCGCGCTTTCTCTCTCACTCGCTGGATTCTTCCGCTAGAGCTGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCGCTCACTGCGTACCTCTCCGTCAATTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTGCTTTCAGTGGCTTGTTTGTCACTTGCAGCTAAAATGGAGGAACCCCTTGTTCCTTCTTTCATGGATCTCCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGGAGGATGGAGCTTCTTGTCTTGACAACTTTGAATTGGCGGCTACGTTCTGTAACACCCTTCAGCTTTATCGGATTCTTCGCTTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTGCACAGAAATTATTCTCTCCAATATTCGAGACGCTAGCTTTCTTGAGTACTGGCCTTCGTGCATTGCTGCCGCAGCCTTACTTTGTGCGGCAAATGAAATACCCAATTTGACCCTCTTGAATCCTGAACATGCCGAGTCTTGGTGCAATGGACTCAGCAAAGAGAAAATTCTCGGATGTTATCGGTTAATGCAGCCGTCAACGGCAAAGAGTCGTCGATGGAAGCCCCCGAAAGTGATACCGCAGGTCCGAGTCCGGATCCGAGCTGGGTTGAGGTACAGTGACTCATCCTCCTCCTCCTCATCATCAAGGTTACCTTTTAAAAGGAGAAAGTTGAATAATTGTGTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTAAGAGCAGACGAATAA 1008 46.63 MSISSSSDCFIDSHLLCDEDSSGILSGDSPDYSSDFESPASTEDSIASFIEDERHFVPGIDYLSRFLSHSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPLVPSFMDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRCTEIILSNIRDASFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAESWCNGLSKEKILGCYRLMQPSTAKSRRWKPPKVIPQVRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCVWVEDDKENSKLRADE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23522607 23525964 - Hsped.08g16100.1 Hepe08g1610 577582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1610 335 SUPERFAMILY Cyclin-like 160 283 IPR036915 -
Hepe08g1610 335 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Hepe08g1610 335 FunFam D2/4-type cyclin 59 176 - -
Hepe08g1610 335 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
Hepe08g1610 335 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Hepe08g1610 335 ProSitePatterns Cyclins signature. 76 107 IPR048258 -
Hepe08g1610 335 Pfam Cyclin, N-terminal domain 45 176 IPR006671 -
Hepe08g1610 335 SMART Cyclin_C_2 178 287 IPR004367 -
Hepe08g1610 335 Gene3D - 48 239 - -
Hepe08g1610 335 Gene3D - 59 176 - -
Hepe08g1610 335 Pfam Cyclin, C-terminal domain 178 276 IPR004367 -
Hepe08g1610 335 SMART cyclin_7 81 169 IPR013763 -
Hepe08g1610 335 PANTHER CYCLINS 38 270 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1828 Hepe-Chr1:83220483 Hepe08g1610 Hepe-Chr8:23522607 1.09e-40 dispersed
Hepe04g0837 Hepe-Chr4:62625013 Hepe08g1610 Hepe-Chr8:23522607 1.29e-24 dispersed
Hepe08g1610 Hepe-Chr8:23522607 Hepe10g1669 Hepe-Chr10:53378694 1.00e-146 dispersed
Hepe08g1610 Hepe-Chr8:23522607 Hepe10g0446 Hepe-Chr10:5063334 1.16e-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1610 K18810 - csv:101210686 607.446