Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1720 ATGGAGCATGGAACAGTGGTGTCGTCCAAGGGCAAGGTGGATACAAATCCTTCAAGTAAATCCTACAAAAAAGTAATAATAGTTGCAGCAATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCATTGTTGACACCTTACGTACAACAACTTGGGGTTCCACATACATGGTCAGCTTTCATATGGCTTTGTGGTCCAATGTCCGGGTTGATTGTGCAGCCGACGGTTGGGTACTATAGCGATCGTTGCACCTCTAGGTTTGGTCGTCGTCGACCCTTCATCGTAGCCGGGGCTGTGTTCGTGGCGGTTGCGGTTTTCCTCATTGGGTTCGCTGCAGACATTGGGCATATAGCGGGAGATGAGCTTTCGAAAGCCACAAAACCAAGGGCGGTGGCGATATTTGTGGTTGGATTTTGGGTCCTCGATGTGGCTAACAATATGTTGCAAGGGCCTTGTAGAGCTCTGTTGGCAGACATGTCATGTAAGAACCACAAAAAGATGAAAATGGCGAATGGATTATTCTCCTTCTTTATGGGTGTAGGGAATGTTTTAGGGTATGCTGCCGGGGCCAATAACAAACTCTATAAAGTCCTTCCCTTCACAGTCACTAAAGCATGTGACCTTTACTGCGCTAACCTAAAAACATGCTTCTTAATCGACATCGTGTTCCTCGTAACGATTACGACGTTCGCGATGGTAATGGTGAGTGAGAAGCCATTCGAGCGGATGGATATGGAGGAAGAAAACTCGACACCCTTTTTCGGGGAGTTGTTTGGAGCGCTGAAGAAGTTGTCAAAGCCGATGTGGATCTTGCTACTTGTAACAGCTTTAAATTGGATTGGTTGGTTCCCATTTATAATGTACGACACTGACTGGATGGGTAGGGAAGTGTATGGTGGTAAGCCAACTGGGAGTCCAGAAGAAGTGAAGTTCTATGACCATGGTGTTCGTGCCGGAGCCCTTGGTTTGATGATAAACTCCTTTATTCTTGGCTTTTCTGCATTGGGAATAGAGCCACTTAGTCGTGTTATAGGAGGGCTCAGGTGGGTTTGGGGATACGTCAACATTATAATTACAATTTGTATGGGATCTATGGTCGTTGTTACAAAGGTTGCTGAGCATTGGAGGGACGTTAATGGCTTGGCACCTCCTCCCCCTAATGTCAAGGCTGGAGCCTTTACCATCTTTGCAATCTTGGGTATTCCACTCTCAGTTAATTATAGTGTTCCCTTTGCCCTAGCATCCATCTTTTCTTCAACCTCCAATGCCGGTCAAGGGCTCTCTTTGGGAATTCTCAACCTCTTCATAGTTTTGCCACAATTTTTTGTGTCGGCCGTTAGTGGGCCGTTAGATGCAGCCTTTGGAGGAGGAAATTTACCCGCATTTGTAATGGGTGGAATCGCGGCTTTTGCCAGCTCAATGTGCGCCATGTTCGTACTCCCCGACCCACCGCCTCAATCCGACGTCGTCTTAACAATGGGTGGTGGCCATTGA 1500 47.27 MEHGTVVSSKGKVDTNPSSKSYKKVIIVAAIAAGVQFGWALQLSLLTPYVQQLGVPHTWSAFIWLCGPMSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGAVFVAVAVFLIGFAADIGHIAGDELSKATKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSCKNHKKMKMANGLFSFFMGVGNVLGYAAGANNKLYKVLPFTVTKACDLYCANLKTCFLIDIVFLVTITTFAMVMVSEKPFERMDMEEENSTPFFGELFGALKKLSKPMWILLLVTALNWIGWFPFIMYDTDWMGREVYGGKPTGSPEEVKFYDHGVRAGALGLMINSFILGFSALGIEPLSRVIGGLRWVWGYVNIIITICMGSMVVVTKVAEHWRDVNGLAPPPPNVKAGAFTIFAILGIPLSVNYSVPFALASIFSSTSNAGQGLSLGILNLFIVLPQFFVSAVSGPLDAAFGGGNLPAFVMGGIAAFASSMCAMFVLPDPPPQSDVVLTMGGGH 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30233147 30235310 - Hsped.08g17200.1 Hepe08g1720 577692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1720 499 Gene3D MFS general substrate transporter like domains 18 482 IPR036259 -
Hepe08g1720 499 PANTHER SUGAR TRANSPORTER 17 481 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Hepe08g1720 499 SUPERFAMILY MFS general substrate transporter 23 487 IPR036259 -
Hepe08g1720 499 FunFam Sucrose transporter SUC2 23 244 - -
Hepe08g1720 499 CDD MFS_SLC45_SUC 26 480 - -
Hepe08g1720 499 NCBIfam sucrose/proton symporter 22 486 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Hepe08g1720 499 Pfam MFS/sugar transport protein 32 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1720 K15378 - - csv:116401998 835.484
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1685 Hepe-Chr8:26899017 Hepe08g1720 Hepe-Chr8:30233147 8.07e-142 dispersed
Hepe08g1720 Hepe-Chr8:30233147 Hepe10g0399 Hepe-Chr10:4392310 7.02e-170 dispersed
Hepe08g1720 Hepe-Chr8:30233147 Hepe08g1860 Hepe-Chr8:47198077 9.42e-142 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G22710 62.3 1.4e-177 619.8
Hepe10g0399 . 28 492 Sucrose Transporter Gene Family AT1G22710 52.2 5.0e-140 495.0
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT2G14670 62.1 2.8e-172 602.1
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT2G14670 51.8 7.2e-136 481.1
Hepe08g1720 . 23 413 Sucrose Transporter Gene Family AT1G66570 59.9 3.0e-144 508.8
Hepe10g0399 . 27 420 Sucrose Transporter Gene Family AT1G66570 51.1 1.8e-112 403.3
Hepe08g1685 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.1 2.0e-183 639.0
Hepe08g1860 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.1 2.6e-183 638.6
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT5G06170 60.6 2.4e-163 572.4
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT5G06170 50.4 1.3e-129 460.3
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT5G43610 61.7 4.5e-170 594.7
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT5G43610 51.4 9.8e-133 470.7
Hepe10g0399 . 1 499 Sucrose Transporter Gene Family AT1G09960 69.1 6.9e-206 713.8
Hepe08g1720 . 8 493 Sucrose Transporter Gene Family AT1G09960 51.8 8.9e-137 484.2
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G71880 59.4 5.2e-169 591.3
Hepe10g0399 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.6 2.4e-134 476.1
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G71890 59.0 1.8e-166 582.8
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G71880 59.4 5.2e-169 591.3
Hepe10g0399 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.6 2.4e-134 476.1
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G22710 62.3 1.4e-177 619.8
Hepe10g0399 . 28 492 Sucrose Transporter Gene Family AT1G22710 52.2 5.0e-140 495.0
Hepe08g1685 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.1 2.0e-183 639.0
Hepe08g1860 . 152 604 Sucrose Transporter Gene Family AT2G02860 69.1 2.6e-183 638.6
Hepe10g0399 . 1 499 Sucrose Transporter Gene Family AT1G09960 69.1 6.9e-206 713.8
Hepe08g1720 . 8 493 Sucrose Transporter Gene Family AT1G09960 51.8 8.9e-137 484.2
Hepe08g1720 . 23 499 Sucrose Transporter Gene Family AT1G71890 59.0 1.8e-166 582.8
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT5G43610 61.7 4.5e-170 594.7
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT5G43610 51.4 9.8e-133 470.7
Hepe08g1720 . 23 413 Sucrose Transporter Gene Family AT1G66570 59.9 3.0e-144 508.8
Hepe10g0399 . 27 420 Sucrose Transporter Gene Family AT1G66570 51.1 1.8e-112 403.3
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT2G14670 62.1 2.8e-172 602.1
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT2G14670 51.8 7.2e-136 481.1
Hepe08g1720 . 23 483 Sucrose Transporter Gene Family AT5G06170 60.6 2.4e-163 572.4
Hepe10g0399 . 27 492 Sucrose Transporter Gene Family AT5G06170 50.4 1.3e-129 460.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60