Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g1747 | ATGGCGGACGTGATGCTGATGAAAGAGATTGAGGAGACTGCTGGTCGGCTTGGGATAGATCTTTCCCAAATTGATTTTGAGTCCATTCGTCTCCCTCCTACCGAGGATTTTGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTATGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCGCCGGAGAAGCTTGAGAAGCTAGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTTATCAAGGATGATGGTCTGTGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGGTACTGCTTTATTGAGTATGGCACTCCTCAGGAGGCTGAGCTTGCCAAGGAGAAGACGGATGGCTACAAGCTAGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGACTTTGACAGATTTATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAACCCATATACTCCGGGGGAAAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATCCGCTCTGGTTCTGACACCGAGGTCTTCTGGAATGATGCTAGACATATGAAGCCTGAGCCAGTCTACAAGCGCCCATTCTGGACAGAGAGTTTTGTGCAGTGGTCCTCCCTGGGGACTTACCTAGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTAACTTACAGCAGCCATGAGCCCAGCAATCCTCGTGATGCAAATAGGATTGTGATCAATATGTTTGATGTGAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTGCTGATGATTTTGCAATTGGAGGAACTGGTGGTGTTGCCGGCGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAGGATGATAAATACTTTGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACAGATACTTTCTCCCTTGTTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGTTGGTCCCCTACAGATCCCATTATTGCACTCTATGTTCCTGAGCTAGGTGGTGGGAACCAACCAGCTAGGGTCAGTCTTGTTCAAATTCCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTTAGTGTTAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACGAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATTAAAGAGCGGGATATTCCTATTGAAGTGTTGGAGCTTGAGAACAAGAACGACAAGATCATTGCATTTGCCTGGGAGCCAAAGGGGCATAGGTTTGCAGTTATTCATGGTGACAACCCAAAGCCAGATATTAGCTTTTACTCTATGCGAAGCACTCACAACAGTGGCCGAGTATCTAAACTTACAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGGTGGACGCTTCATTATTCTTGCTGGCCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACAATGGCTACTGCCGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCAACTGCTGTAACTTCAGTTCACGAGATGGAAAATGGTTTCAACATATGGTCCTTCAATGGAAAGCTCCTCTATCGAATCTTGAAGGACCATTTCTTTCAGTTTGCATGGCGGCCGAGGCCAGCATCCTTCTTGAGTCCCGAGAAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCAATGCTACTGAGCGAGCAGGATCGCGAGAAACGGAGAATGTTGAAGGACGACTGGGAGAAGTGGGTGAATGAATGGAAGAGATTTCACGAAGAAGAGAAGCTGTTGCGGGAGAAACTGCGGGATGGCGAAGCCAGTGATGAGGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTAGAAGAGATTTTGGATGTGTCGGAGGAAGTTTTGTCGTTTGATTTTGGGCAGGAATGA | 2160 | 44.91 | MADVMLMKEIEETAGRLGIDLSQIDFESIRLPPTEDFGIISDDEEVLQEESLEYDSGFGNIIVVDNLPVVPPEKLEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEINPYTPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHMKPEPVYKRPFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINMFDVRTGKVMRDFKGSADDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETDTFSLVDKKSLKVENVMDFCWSPTDPIIALYVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPASFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDDWEKWVNEWKRFHEEEKLLREKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQE | 719 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 32744103 | 32748738 | + | Hsped.08g17470.1 | Hepe08g1747 | 577719 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g1747 | 719 | SUPERFAMILY | DPP6 N-terminal domain-like | 217 | 600 | - | - | |
Hepe08g1747 | 719 | Gene3D | - | 59 | 143 | IPR012677 | - | |
Hepe08g1747 | 719 | SMART | rrm1_1 | 61 | 143 | IPR000504 | GO:0003723(InterPro) | |
Hepe08g1747 | 719 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 147 | IPR000504 | GO:0003723(InterPro) | |
Hepe08g1747 | 719 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 181 | 382 | - | - | |
Hepe08g1747 | 719 | Gene3D | - | 416 | 620 | IPR015943 | GO:0005515(InterPro) | |
Hepe08g1747 | 719 | CDD | RRM_eIF3B | 59 | 143 | IPR034363 | - | |
Hepe08g1747 | 719 | Coils | Coil | 687 | 707 | - | - | |
Hepe08g1747 | 719 | PIRSF | Transl_init_eIF3b | 7 | 713 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Hepe08g1747 | 719 | Gene3D | - | 175 | 382 | IPR015943 | GO:0005515(InterPro) | |
Hepe08g1747 | 719 | SUPERFAMILY | RNA-binding domain, RBD | 59 | 141 | IPR035979 | GO:0003676(InterPro) | |
Hepe08g1747 | 719 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 55 | 154 | - | - | |
Hepe08g1747 | 719 | Hamap | Eukaryotic translation initiation factor 3 subunit B [EIF3B]. | 48 | 713 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Hepe08g1747 | 719 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 411 | 626 | - | - | |
Hepe08g1747 | 719 | Pfam | RNA recognition motif | 82 | 136 | IPR000504 | GO:0003723(InterPro) | |
Hepe08g1747 | 719 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 31 | 708 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro) | |
Hepe08g1747 | 719 | Pfam | Eukaryotic translation initiation factor eIF2A | 406 | 606 | IPR013979 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe06g0086 | Hepe-Chr6:2657853 | Hepe08g1747 | Hepe-Chr8:32744103 | 0.0 | dispersed | |
Hepe08g1747 | Hepe-Chr8:32744103 | Hepe08g1906 | Hepe-Chr8:49781543 | 0.0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g1747 | K03253 | - | csv:101213144 | 1405.96 |