Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1888 ATGGGGTCCTGCTTGTCTGCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACCTCTCCTTCTAAGCACCATCGAACCAAGTATGGTTCCAAGAGGCGAAATTCTTCTCGGAATTCCTCCTTTGGGGATCTCCATCGGATCTCCGGCAGGCTCTTCTCCAATGGCTTCACTGATCTTTCTTCTCTCTTCACGCAGCAGGGCAAGAAAGGGACCAATCAGGATGCTATGATTGTTTGGGAGAATTTTGGCTCTAGAACTGATACGATCTTCTGTGGGGTCTTCGATGGCCACGGCCCATATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTCAACTTGACCACCGATGATGTTCTTAGAGAGATCAGCCTTAATACAGGAAGTATGAACGCGGATGAGGCTACCTCCTTTTTATCTGCCGATGAAGAGTATAGGGCCTCCATTGATGTTGATGGAACAGAAAAGCAACCTGAAATTTTCCATACTTTGAAGGAGTCATTTCTTAAGGCCTATAGAGTTATGGATAGGGAACTCAGAATGCACCAAACTATAGATAGCTACTGTAGTGGGACTACAGCAGTGACTATAGTTAAACAGGGTCAGGATCTTGTCATTGGAAACGTTGGGGACTCCAGAGCTGTTTTGGGTACGAGAGATAAAGATGACTCTCTTGTTGCAATTCAATTGACTGTGGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAAGTGTAAAGGTCGTGTCTTTGCTCTCCAAGACGAACCGGATGTTTGTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCGCGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATTTCTGTACCTGAAATATCATATCGAAGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTGCTGTCAAACAAAGAGGTCGTAGATATTGTTGCATCAGCTCCAAAACGTAGTACTGCAGCTCGAACTCTGGTGGAGATAGCCATTAAAGCATGGAAATATAAATACCCAACTTCCAAGATCGATGACTGTGCAGTCATTTGCCTCTTCCTCGACTCAAACTCCAGCAATCTATCATCTGCTTCCAATACCAAACCAGAAGAGCAACAAAGTTTAACAGCAGATCAACTCAGCACTGCAGTTGAGAATGAAGATCTCTCTGGGCCAAATGGTCTGAATCGTTCGGGAACCGTCCGAACGAGCAAAGAAATCTTGCAGGATGGAAGCGAAGAAGAAGAAGAAGAAGAAGATGAATCGAAGGAGGAACTGTCAGAAATTGGAATAGAATGGTCTGCCCTGGAAGGAGTCTCACGCGTAAACACTTTGGTAAACCTGCCAAGATTTGATCCTGGAAAAGATGATAAGAAAGGCCGTAAGTAA 1461 45.52 MGSCLSAESRSPIPGSPTSPSKHHRTKYGSKRRNSSRNSSFGDLHRISGRLFSNGFTDLSSLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVLREISLNTGSMNADEATSFLSADEEYRASIDVDGTEKQPEIFHTLKESFLKAYRVMDRELRMHQTIDSYCSGTTAVTIVKQGQDLVIGNVGDSRAVLGTRDKDDSLVAIQLTVDLKPNLPAEAERIRKCKGRVFALQDEPDVCRVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVDIVASAPKRSTAARTLVEIAIKAWKYKYPTSKIDDCAVICLFLDSNSSNLSSASNTKPEEQQSLTADQLSTAVENEDLSGPNGLNRSGTVRTSKEILQDGSEEEEEEEDESKEELSEIGIEWSALEGVSRVNTLVNLPRFDPGKDDKKGRK 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48728316 48732049 + Hsped.08g18880.1 Hepe08g1888 577860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1888 486 Gene3D - 59 380 IPR036457 -
Hepe08g1888 486 ProSiteProfiles PPM-type phosphatase domain profile. 59 378 IPR001932 -
Hepe08g1888 486 MobiDBLite consensus disorder prediction 407 430 - -
Hepe08g1888 486 SMART PP2C_4 47 376 IPR001932 -
Hepe08g1888 486 MobiDBLite consensus disorder prediction 407 452 - -
Hepe08g1888 486 FunFam probable protein phosphatase 2C 33 54 381 - -
Hepe08g1888 486 MobiDBLite consensus disorder prediction 1 42 - -
Hepe08g1888 486 Coils Coil 429 456 - -
Hepe08g1888 486 Pfam Protein phosphatase 2C 173 357 IPR001932 -
Hepe08g1888 486 SUPERFAMILY PP2C-like 59 379 IPR036457 -
Hepe08g1888 486 CDD PP2Cc 60 378 IPR001932 -
Hepe08g1888 486 MobiDBLite consensus disorder prediction 434 450 - -
Hepe08g1888 486 MobiDBLite consensus disorder prediction 1 23 - -
Hepe08g1888 486 PANTHER PROTEIN PHOSPHATASE 43 377 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1010 Hepe-Chr3:55012115 Hepe08g1888 Hepe-Chr8:48728316 1.06e-162 dispersed
Hepe08g1761 Hepe-Chr8:34251428 Hepe08g1888 Hepe-Chr8:48728316 0.0 dispersed
Hepe08g1888 Hepe-Chr8:48728316 Hepe08g2285 Hepe-Chr8:62599518 7.70e-115 dispersed
Hepe06g1222 Hepe-Chr6:61844327 Hepe08g1888 Hepe-Chr8:48728316 2.84e-161 transposed
Hepe08g1888 Hepe-Chr8:48728316 Hepe09g1273 Hepe-Chr9:17359646 2.33e-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1888 - - - 0.0