Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1924 ATGGGTTCAATCAACTGGTTGGGCTTCTCTCTCTCCCCTCAAGAACAACAACTCCCACACCAACCCTCCGACCACCCTCACGATGGCGCCACCGCCTTCACCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTACCTATGGCGACTATGAACCCTTCAACCGCAATAATCACTCTCAAGATTGGAATAATAGTATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCAGCTTTAATCGAAACCCAACACCAACCAAAGCTTGAAAATTTCCTCGGCCACCACTCATTCACCGACCACGACCACGCCGCCGTCGTGTACACCAATGCCTCCGGCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCAATATCTGAGGCCAACGGTGGCGGTGGTGGAAGAACCAACGCCACTGGAAACGGCAACAACAGTAGTAGCTCTATTGGGTTGTCTATGATCAAGACGTGGCTGAGAAATCAACCGGCGCCGCCGCAAGCGGTGGTCAAGAGCGGAGGAGATCACGACGGTGCAGTTCGATCAGCTCATATCACAAACGCACATACTTTATCGCTGTCGATGAATACCGGGCCACCCCCACCATCGCAGTCCTCCGGCTCGACAGCTCTGCCACTTCTCACGACCAACGGCGGTGGAAGCGGTGGCGAAACCTCCTCCTCCGACACCAAACAACCCAAATCGGACGCTGAAAACGGCGCGGTTGAAGCTGTCCCGAGAAAATCTGTCGACACATTCGGACAAAGAACTTCCATCTACCGCGGTGTAACCAGACATAGATGGACAGGAAGATATGAAGCTCATCTATGGGACAATAGTTGCAGAAGAGAAGGACAAACTAGAAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCTGCAAGAGCCTACGATTTAGCAGCACTGAAATATTGGGGTACCACAACCACAACTAACTTTCCAATTAGTGATTACGAAAAAGAAGTGGAAGACATGAAGCATATGACCAGGCAAGAGTTTGTTGCGTCTCTCAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCCATTTACCGTGGAGTAACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCTGGGAATAAAGACCTCTACTTGGGAACTTTCAGTACGCAAGAGGAAGCAGCGGAGGCATACGACATAGCAGCCGTAAAGTTTCGGGGACTAAATGCAGTAACTAACTTCGACATGAGCCGTTACGATGTGAAAGCCATTCTTGAAAGCAACACATTACCCATTGGTGGTGCTGCGAAGCGCTTAAAAGACATCGCCCACTCCGACAACATTCCCCTTCACCCCCAACCATCCGACAACACCCTAACTTCACACCTTTCCGATGGAATAATCAGTACCAGCAGTGGATGGCCCTCTCCCGCCTTCCACCACCCCTATGCCTTCCACTACCCGTATGCCGCCCCACAGAACCGACTGTGGTGTAAGCAAGAGCCCGATGCCACCCTCACTGCTGCTGACAACTTCTTCCCACACAGCGGGGCAATGGACTCCATGGACCCATACCATTGGATGGGAGCCGCGGGGGTGGACAATGGCGGATTGGGAGACATTGGAGAACTTAATTTCTTTGCTTCTTCTCCTAACGTAGATCACCCATACCATGCAACAAGAACCACCAATATGTATAATAATTATCATAATTCCTCTCATCAGCTGCAGCCGCCGCCTCCATCCACGCTGCAACCGCCGCCGCCGCCTTTCACCATTTGGAATGACACTTAA 1803 50.86 MGSINWLGFSLSPQEQQLPHQPSDHPHDGATAFTSDVSAVCFDNLPSTYGDYEPFNRNNHSQDWNNSMKGLGSTQSSDFSALIETQHQPKLENFLGHHSFTDHDHAAVVYTNASGNYMFQNCSLELPISEANGGGGGRTNATGNGNNSSSSIGLSMIKTWLRNQPAPPQAVVKSGGDHDGAVRSAHITNAHTLSLSMNTGPPPPSQSSGSTALPLLTTNGGGSGGETSSSDTKQPKSDAENGAVEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKEVEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAVKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIAHSDNIPLHPQPSDNTLTSHLSDGIISTSSGWPSPAFHHPYAFHYPYAAPQNRLWCKQEPDATLTAADNFFPHSGAMDSMDPYHWMGAAGVDNGGLGDIGELNFFASSPNVDHPYHATRTTNMYNNYHNSSHQLQPPPPSTLQPPPPPFTIWNDT 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 51016520 51021194 - Hsped.08g19240.1 Hepe08g1924 577896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1924 600 FunFam AP2-like ethylene-responsive transcription factor 359 420 - -
Hepe08g1924 600 ProSiteProfiles AP2/ERF domain profile. 261 324 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1924 600 PRINTS Ethylene responsive element binding protein signature 262 273 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1924 600 PRINTS Ethylene responsive element binding protein signature 400 420 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1924 600 CDD AP2 359 420 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1924 600 MobiDBLite consensus disorder prediction 193 237 - -
Hepe08g1924 600 MobiDBLite consensus disorder prediction 582 600 - -
Hepe08g1924 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 183 454 - -
Hepe08g1924 600 MobiDBLite consensus disorder prediction 567 581 - -
Hepe08g1924 600 ProSiteProfiles AP2/ERF domain profile. 360 418 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1924 600 SMART rav1_2 261 330 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1924 600 SMART rav1_2 360 424 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1924 600 Pfam AP2 domain 361 410 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1924 600 SUPERFAMILY DNA-binding domain 260 326 IPR016177 GO:0003677(InterPro)
Hepe08g1924 600 SUPERFAMILY DNA-binding domain 359 420 IPR016177 GO:0003677(InterPro)
Hepe08g1924 600 MobiDBLite consensus disorder prediction 567 600 - -
Hepe08g1924 600 FunFam AP2-like ethylene-responsive transcription factor ANT 260 326 - -
Hepe08g1924 600 CDD AP2 260 326 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1924 600 Gene3D AP2/ERF domain 360 420 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1924 600 Gene3D AP2/ERF domain 261 326 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g1924 600 MobiDBLite consensus disorder prediction 193 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1835 Hepe-Chr8:45654109 Hepe08g1924 Hepe-Chr8:51016520 0.0 dispersed
Hepe08g1924 Hepe-Chr8:51016520 Hepe09g0476 Hepe-Chr9:4398524 2.00e-115 dispersed
Hepe07g0569 Hepe-Chr7:6096763 Hepe08g1924 Hepe-Chr8:51016520 4.52e-113 transposed
Hepe08g0110 Hepe-Chr8:926720 Hepe08g1924 Hepe-Chr8:51016520 1.52e-98 transposed
Hepe02g1946 Hepe-Chr2:33659694 Hepe08g1924 Hepe-Chr8:51016520 1.79e-74 wgd
Hepe03g0920 Hepe-Chr3:38640390 Hepe08g1924 Hepe-Chr8:51016520 9.77e-06 wgd
Hepe05g0800 Hepe-Chr5:19156197 Hepe08g1924 Hepe-Chr8:51016520 9.38e-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56248 PF00847 AP2 3.10E-09 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1924 K09285 - csv:101219473 870.537