Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1932 ATGGAATCGGAGGACGACCTCGACATGCACGATGCCCATGACGACGACGACGACGACGACTCTGCTGACAATGACGAGGACTTCTACAGTGGCGGCGACGACGACGCTGCTGCCATCGACAGCGACGATGCTGATGTCGGCGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGATGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGCTGAGGCAGATATACAACAGCGACAAGAGGAAGATATCGTGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGCGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGAGCTGTTGGCTTATTAGAAAAACCAGTTTTGCGACATTCAAATGAAGTTGAAATACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATTCAGTCCACTGCTTGTGGCCATCCATTTTGCAATACGTGTTGGACAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGCTGCTGCTGTTGGTCAAGATATGATTAATTTATTGGCTTCTAATGATGACAAAAAGAAGTACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCAAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGGCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGGGAGATGGCCAAGAATTCTCTGGAGAGGTATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCGAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAAAGTTAAGTGACATTCAGTGCCAACCCGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTACGGATATTATCTACCCGAGCGTGAACATGCCAAGAGACAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCAAGTTTACCTAAATGCTGAGGGTCCTTCCAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGATGTGGACTCCCATGGTACCTGCAGCAGAACATCAAGCTCAAAGAGTACTGGTGGCTGTAGGAGTAAAGGCGGGAAGGGCAAGATGAGCGCATTCAGAGCTGGTGGTTCAAGTCGAACCGTCGATGATACTGACCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGTCAAGTCAGCTACCTTCTGCCAAATGTGCCAGCGACGGCGATAA 1797 44.85 MESEDDLDMHDAHDDDDDDDSADNDEDFYSGGDDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQRQEEDIVRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLEKPVLRHSNEVEIPCGICFEIYSRDKIQSTACGHPFCNTCWTGYISTSINDGPGCLMLRCPDPSCAAAVGQDMINLLASNDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWADHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTSSSKSTGGCRSKGGKGKMSAFRAGGSSRTVDDTDHWSCEHCTFANVKSATFCQMCQRRR 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 51899510 51965155 + Hsped.08g19320.1 Hepe08g1932 577904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1932 598 CDD Rcat_RBR_ARI7-like 302 356 - -
Hepe08g1932 598 ProSitePatterns Zinc finger RanBP2-type signature. 575 594 IPR001876 -
Hepe08g1932 598 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 407 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Hepe08g1932 598 MobiDBLite consensus disorder prediction 1 58 - -
Hepe08g1932 598 CDD RING-HC_ARI6-like 145 206 - -
Hepe08g1932 598 ProSiteProfiles TRIAD supradomain profile. 144 357 IPR044066 -
Hepe08g1932 598 Pfam Zinc finger, C3HC4 type (RING finger) 148 184 IPR018957 GO:0046872(InterPro)
Hepe08g1932 598 FunFam RBR-type E3 ubiquitin transferase 142 231 - -
Hepe08g1932 598 Pfam Ariadne domain 366 528 IPR045840 -
Hepe08g1932 598 MobiDBLite consensus disorder prediction 530 548 - -
Hepe08g1932 598 SMART zf_4 573 597 IPR001876 -
Hepe08g1932 598 SUPERFAMILY RING/U-box 145 226 - -
Hepe08g1932 598 Pfam IBR domain 301 341 - -
Hepe08g1932 598 CDD BRcat_RBR_ANKIB1 224 288 - -
Hepe08g1932 598 Gene3D - 275 530 - -
Hepe08g1932 598 MobiDBLite consensus disorder prediction 1 60 - -
Hepe08g1932 598 SMART ibrneu5 283 353 IPR002867 GO:0008270(InterPro)
Hepe08g1932 598 SMART ibrneu5 217 279 IPR002867 GO:0008270(InterPro)
Hepe08g1932 598 MobiDBLite consensus disorder prediction 530 571 - -
Hepe08g1932 598 SUPERFAMILY RING/U-box 298 346 - -
Hepe08g1932 598 Gene3D - 569 598 - -
Hepe08g1932 598 Pfam IBR domain, a half RING-finger domain 217 279 IPR002867 GO:0008270(InterPro)
Hepe08g1932 598 FunFam RBR-type E3 ubiquitin transferase 280 530 - -
Hepe08g1932 598 ProSiteProfiles Zinc finger RING-type profile. 148 192 IPR001841 -
Hepe08g1932 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 228 IPR013083 -
Hepe08g1932 598 SUPERFAMILY RING/U-box 218 286 - -
Hepe08g1932 598 ProSiteProfiles Zinc finger RanBP2 type profile. 571 598 IPR001876 -
Hepe08g1932 598 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 81 120 IPR048962 -
Hepe08g1932 598 SUPERFAMILY Ran binding protein zinc finger-like 571 598 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1932 K11968 - - csv:101218052 1140.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1020 Hepe-Chr3:55936459 Hepe08g1932 Hepe-Chr8:51899510 2.43e-318 dispersed
Hepe08g1932 Hepe-Chr8:51899510 Hepe08g1843 Hepe-Chr8:46164162 0.0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1038 . 165 590 ARIADNE family AT4G34370 71.0 2.2e-181 632.1
Hepe08g1038 . 59 543 ARIADNE family AT2G16090 77.2 1.1e-224 776.2
Hepe08g1038 . 29 544 ARIADNE family AT3G27710 61.3 1.3e-183 639.8
Hepe08g1038 . 45 522 ARIADNE family AT3G27720 54.6 5.5e-144 508.1
Hepe08g1932 . 25 543 ARIADNE family AT1G05890 65.1 1.4e-221 766.1
Hepe08g1843 . 25 543 ARIADNE family AT1G05890 64.9 4.0e-221 764.6
Hepe03g1020 . 57 540 ARIADNE family AT1G05890 72.5 2.0e-217 752.3
Hepe08g1932 . 25 598 ARIADNE family AT1G65430 74.4 6.8e-263 903.3
Hepe08g1843 . 25 598 ARIADNE family AT1G65430 74.3 2.0e-262 901.7
Hepe03g1020 . 16 586 ARIADNE family AT1G65430 69.8 3.2e-244 841.3
Hepe08g1843 . 25 462 ARIADNE family AT2G31780 56.2 1.8e-149 526.2
Hepe08g1932 . 25 462 ARIADNE family AT2G31780 56.2 1.8e-149 526.2
Hepe03g1020 . 54 450 ARIADNE family AT2G31780 58.4 4.1e-146 515.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72