Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe08g1932 | ATGGAATCGGAGGACGACCTCGACATGCACGATGCCCATGACGACGACGACGACGACGACTCTGCTGACAATGACGAGGACTTCTACAGTGGCGGCGACGACGACGCTGCTGCCATCGACAGCGACGATGCTGATGTCGGCGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGATGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGCTGAGGCAGATATACAACAGCGACAAGAGGAAGATATCGTGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGCGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGAGCTGTTGGCTTATTAGAAAAACCAGTTTTGCGACATTCAAATGAAGTTGAAATACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATTCAGTCCACTGCTTGTGGCCATCCATTTTGCAATACGTGTTGGACAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGCTGCTGCTGTTGGTCAAGATATGATTAATTTATTGGCTTCTAATGATGACAAAAAGAAGTACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCAAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGGCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGGGAGATGGCCAAGAATTCTCTGGAGAGGTATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCGAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAAAGTTAAGTGACATTCAGTGCCAACCCGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTACGGATATTATCTACCCGAGCGTGAACATGCCAAGAGACAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCAAGTTTACCTAAATGCTGAGGGTCCTTCCAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGATGTGGACTCCCATGGTACCTGCAGCAGAACATCAAGCTCAAAGAGTACTGGTGGCTGTAGGAGTAAAGGCGGGAAGGGCAAGATGAGCGCATTCAGAGCTGGTGGTTCAAGTCGAACCGTCGATGATACTGACCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGTCAAGTCAGCTACCTTCTGCCAAATGTGCCAGCGACGGCGATAA | 1797 | 44.85 | MESEDDLDMHDAHDDDDDDDSADNDEDFYSGGDDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQRQEEDIVRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLEKPVLRHSNEVEIPCGICFEIYSRDKIQSTACGHPFCNTCWTGYISTSINDGPGCLMLRCPDPSCAAAVGQDMINLLASNDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWADHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTSSSKSTGGCRSKGGKGKMSAFRAGGSSRTVDDTDHWSCEHCTFANVKSATFCQMCQRRR | 598 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 51899510 | 51965155 | + | Hsped.08g19320.1 | Hepe08g1932 | 577904 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe08g1932 | 598 | CDD | Rcat_RBR_ARI7-like | 302 | 356 | - | - | |
| Hepe08g1932 | 598 | ProSitePatterns | Zinc finger RanBP2-type signature. | 575 | 594 | IPR001876 | - | |
| Hepe08g1932 | 598 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 60 | 407 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
| Hepe08g1932 | 598 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
| Hepe08g1932 | 598 | CDD | RING-HC_ARI6-like | 145 | 206 | - | - | |
| Hepe08g1932 | 598 | ProSiteProfiles | TRIAD supradomain profile. | 144 | 357 | IPR044066 | - | |
| Hepe08g1932 | 598 | Pfam | Zinc finger, C3HC4 type (RING finger) | 148 | 184 | IPR018957 | GO:0046872(InterPro) | |
| Hepe08g1932 | 598 | FunFam | RBR-type E3 ubiquitin transferase | 142 | 231 | - | - | |
| Hepe08g1932 | 598 | Pfam | Ariadne domain | 366 | 528 | IPR045840 | - | |
| Hepe08g1932 | 598 | MobiDBLite | consensus disorder prediction | 530 | 548 | - | - | |
| Hepe08g1932 | 598 | SMART | zf_4 | 573 | 597 | IPR001876 | - | |
| Hepe08g1932 | 598 | SUPERFAMILY | RING/U-box | 145 | 226 | - | - | |
| Hepe08g1932 | 598 | Pfam | IBR domain | 301 | 341 | - | - | |
| Hepe08g1932 | 598 | CDD | BRcat_RBR_ANKIB1 | 224 | 288 | - | - | |
| Hepe08g1932 | 598 | Gene3D | - | 275 | 530 | - | - | |
| Hepe08g1932 | 598 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Hepe08g1932 | 598 | SMART | ibrneu5 | 283 | 353 | IPR002867 | GO:0008270(InterPro) | |
| Hepe08g1932 | 598 | SMART | ibrneu5 | 217 | 279 | IPR002867 | GO:0008270(InterPro) | |
| Hepe08g1932 | 598 | MobiDBLite | consensus disorder prediction | 530 | 571 | - | - | |
| Hepe08g1932 | 598 | SUPERFAMILY | RING/U-box | 298 | 346 | - | - | |
| Hepe08g1932 | 598 | Gene3D | - | 569 | 598 | - | - | |
| Hepe08g1932 | 598 | Pfam | IBR domain, a half RING-finger domain | 217 | 279 | IPR002867 | GO:0008270(InterPro) | |
| Hepe08g1932 | 598 | FunFam | RBR-type E3 ubiquitin transferase | 280 | 530 | - | - | |
| Hepe08g1932 | 598 | ProSiteProfiles | Zinc finger RING-type profile. | 148 | 192 | IPR001841 | - | |
| Hepe08g1932 | 598 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 228 | IPR013083 | - | |
| Hepe08g1932 | 598 | SUPERFAMILY | RING/U-box | 218 | 286 | - | - | |
| Hepe08g1932 | 598 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 571 | 598 | IPR001876 | - | |
| Hepe08g1932 | 598 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 81 | 120 | IPR048962 | - | |
| Hepe08g1932 | 598 | SUPERFAMILY | Ran binding protein zinc finger-like | 571 | 598 | IPR036443 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe03g1020 | Hepe-Chr3:55936459 | Hepe08g1932 | Hepe-Chr8:51899510 | 2.43e-318 | dispersed | |
| Hepe08g1932 | Hepe-Chr8:51899510 | Hepe08g1843 | Hepe-Chr8:46164162 | 0.0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe08g1932 | K11968 | - | csv:101218052 | 1140.56 |