Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1959 ATGGCCACTCTTTCTTGCCAACCTTCCGATTTGGCGCAGCTGATCGGCTCCACAGCCACCGGCAATTCCACCGCCGTAGCTGAGTTCCTATGCTCAAGGTTCAACGCCGTAGCCACCACTTTGACCACCACAACCTACGCCCTCGACAACACCTACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTCGGCTTTGCCATGCTCTGCGCTGGCTCTGTCCGCGCCAAAAACACCATGAACATCATGCTAACCAACGTTCTCGACGCCGCCGCTGGTGGCCTCTCCTACTACCTCTTTGGCTTTGCCTTCGCCTTTGGTGCCCCCTCCAACTCCTTCATCGGCCGCCACTTTTTCGGCCTCTCCAATTTTCCTAACCCCTCCACCGATTATAGCTTCTTCCTCTATCAATGGGCTTTCGCTATTGCTGCCGCAGGTATCACGAGTGGCTCAATAGCCGAGCGAACTCAATTTGTGGCCTACCTCATTTACTCCACCGTCTTGACCGGCTTTGTCTACCCCATAGTCTCTCATTGGTTTTGGTCCGCCGACGGGTGGGCCAGCCCATCCCGACCCGAAAACCACCTATTCAACTCGGGCGCAATTGACTTTGCCGGGTCCGGCGTGGTTCACATGGTCGGCGGCATAGCCGGTCTCTGGGGCGCCCTAATCGAAGGCCCCCGAATCGGACGGTTCGACCGCTCCGGTCGATCCGTTGCCCTCCGAGGCCACAGTGCCTCACTCGTCGTCCTCGGCACCTTCCTCCTCTGGTTCGGTTGGTACGGCTTTAACCCCGGCTCCTTCCTAACCATCTCCAAATCCTACAATGACGGCCGTCCATACTATGGGCAGTGGAGCGCCATAGGCCGAACCGGAGTGACGACAACACTCGCCGGATGCACCGCTGCCTTAACAACCCTCTTCACAAAGCGCCTATTAGTCGGGCATTGGAACGTGATCGACGTCTGCAACGGGCTACTAGGCGGGTTCGCTGCCATCACATCCGGCTGCGCCGTGGTGGAGCCATGGGCGGCGGTGATATGTGGATTCGTGGCGTCGTGGGTGTTAACCGGGTTCAACAAGCTAGCGGAGAGATTCAACTACGATGACCCATTAGAGGCGGCGCAACTGCACGGCGGGTGCGGGGCGTGGGGGCTGATATTCACGGGATTATTCGCGAGGAAGGAGTACGTGTGGGAGGTATATTCGGCGGGTAGGCCATACGGGCTGTTGATGGGCGGCGGAGGGAGGCTGCTGGCGGCGCAGGTGGTGGAGATATTGGCGATAGTGGGGTGGGTGTCGGTGACAATGGGGGCATTGTTTTATGGGCTGAAGAAGGCGAAACTGTTGAGGGTATCGAAGGAGCATGAGATGGCAGGGATGGATCTGACGAGGCATGGAGGGTTTGCTTACGTGTATAATGACGAGGACGATCCGTCTGTGAGGCCGCCTGGGTTTATGATGACAAGGATTCAGCCTGCCGATGGGAGTTCTCCTGATGATCGTACTCCTGCTTCAGCCATGGCGGCTGTTTGA 1539 58.09 MATLSCQPSDLAQLIGSTATGNSTAVAEFLCSRFNAVATTLTTTTYALDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSNFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTVLTGFVYPIVSHWFWSADGWASPSRPENHLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGTFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLTGFNKLAERFNYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVWEVYSAGRPYGLLMGGGGRLLAAQVVEILAIVGWVSVTMGALFYGLKKAKLLRVSKEHEMAGMDLTRHGGFAYVYNDEDDPSVRPPGFMMTRIQPADGSSPDDRTPASAMAAV 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 53532006 53534098 + Hsped.08g19590.1 Hepe08g1959 577931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1959 512 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe08g1959 512 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe08g1959 512 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe08g1959 512 Gene3D Ammonium transporter AmtB like domains 30 484 IPR029020 -
Hepe08g1959 512 SUPERFAMILY Ammonium transporter 46 453 - -
Hepe08g1959 512 FunFam Ammonium transporter 30 487 - -
Hepe08g1959 512 MobiDBLite consensus disorder prediction 491 512 - -
Hepe08g1959 512 PANTHER AMMONIUM TRANSPORTER 18 479 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1708 Hepe-Chr5:67348384 Hepe08g1959 Hepe-Chr8:53532006 1.17e-246 dispersed
Hepe06g1884 Hepe-Chr6:70050425 Hepe08g1959 Hepe-Chr8:53532006 1.04e-257 dispersed
Hepe08g1959 Hepe-Chr8:53532006 Hepe03g0333 Hepe-Chr3:4540992 3.57e-258 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1959 K03320 - csv:101222356 885.56