Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1995 ATGAATCTAACCAAAAACATAAAAAAAATAAAATACCCTAAACTTGAAATCAGAGTCTGGGAAGAAGAAGATTTAAAAAAAAAAAAACAAACAAATGAGAAGAAGAAGACATACCTGGAAAAGTCGGAGAAGAAGAAGAAGAATGGAGAAAATTATGCCCGGGCTAAAGGAAAAGTCACGATTTTCGGAGGCTTCACACTTATTATTATTATTATTTTTACCAAATTAGAAAGGAAAAGTTTCCAAATTTCAATAAATAAAACAAAATCCAAACGCGGCCTTAAATCATCTCCCCAACCCTATTTATCTCCAATCCAACCAACCCAAACCCCAGATGTGGTGGTACTGGATACAGTTTCTCTTACATATGACATAGTTGCTCTAATTTCAGGTGATATGGGGACAGAGCTTATAAGAGTTTGTGTTGAAGAAGATAGTGATGACTTTCCATCAGTTCCACCAGGTTTCGAGTCATTTATATCCTTTCCTCTAGGGAAGGTGCACAATCATGAAAAACAAGACAGTCATGTCCCTATTAGTTTGCCGAAAACCGTCTCTGAATCACAACCAGCTAAAATGGAAACTGAGGTAGAAGTTGCCGATGTTGCAAAAGTAATGAGGTCCCTCCGGCGTAAACCATGTATAAACTATAGACAATATGATTACTGCTCCGACGACGAGCGTGATACTAAGCGTCTTGATCAGAATTTTTCTTTAAGGCCTCCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGGACCTTGAGGATGCTCCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCACCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATGTGGGAGAGTTCTAAATTTGCAACTCGTGTCCAAAGGATTGATAAGCTTCAAAATCGAGATTCAATAAGAAAGAACTTTAGGATTTGCAATCAAATGAGAAGGAAAAGGAGAAGGGGTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGAAAAAGTGGAGATGCTGGGTCTAATGAAGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTACTTTAGCATTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAGTATTTTAGTAAAACACTCAATGATACTGCAAAGGGATGTAACGCGTCCATGCTGCAAGAGAACGAACATTGGAAACCATCTTTGGAAAATATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTGCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCCAAAGAGTTGCACCCAAGAGGGCTCTACATCAGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGACCTCTTTGATGAACAACCCGATTTACTTCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAATCCGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGCGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCGGTTGACTGGTTGCCCCATGGTCAATTTGCTGTACAATTATATCGTGAGCAGGGACGAAGAACTACTATTTCCCATGATAAACTTTTGCTTGGTGCCGCGAGAGAAGCTGTGAGAGCGCACTGGGAACTTAATTTACTGAAAAAAAATACTTTGGATAACTTAAGATGGAATAATGTTTGTGGAAAAGATGGAGTCTTAGCAAGAGCATTCAAGACACGTGTTGAGATGGAGTGTGCATGGAGGAACCTTCCTTGCAGTTCTTCTCAGGCAATGAAGATGGAGAGAAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCAAAGCAGTTGTGTTCTTGTGCTTGGGAAGAGAGATTTTTTCTCTTTCGCTATGACATCAGTGAATTGAACATACTTCTTGAAGCATTGCAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTAGCGCTCAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCTTTGGGAATCCTAATTGGAAAGAATTCTTGAGGCAATCTTCATTACTGCCAACTCAAACTGCTATTGACAGCCCTTCTCATCAAGCCAAAAAGTTATCTGAAGTTACTGCTTCTGTTCTAGAGGATCAGAAGGTAATTTCTACACTTCACGGACCTGGGAGGGAAGTTGAGCAGCAAAATCATAAATCTGAGGTGAAAAGAGAAACCTATGACCTTGTGGAAACCAATTCGAGGCATGCAGGTTCACAATTTTCTAAGGAGGATACAAATGCTCTGCATTTGGTAGAAGTGAAAAATAAAATGGATAAAATGTGTCCTGCAAATGTCATACTACTAAGTGATGATGAAGGTGATGAGCATAAGAAGATGGTTTCAAATGGTTTAGCTGAAAGTTCAGTAGTAAAGCAGCTGGAAACTTCAGATCGGTTCACTGATGTTGATTCTAAGACTAGCCTGTGCAACCACAATGAAAATGCAATCTTGCACACCCCGGTGACTGATGCAACGACCAAGGAAGAAAAGGAGGTCAACTTGTCGATCGAAAGAAAAGTGAATAATTGCCAATCGAGTATCATACCTTTAAACAATAAACAGTCTCAAAACATTAACTTATCAGTTAGAAATGCATCGAATGCTATTCAGAACAACAATGCTTCAGAAGCAAGATTAGGTCATAGTAATAAAGTATTTCCAGCTTCAACAGATACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAACCGAATGAGGGTACGACGCATGGAAATGTGGGAACAAGTGCTACCTCTTGTTTGTTAGACACTAATAGAGCTACTGGAAATTTATCCTGCAATCAAGCTAATGTGGACAGATTCTTGAGGCAGAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATTAATTGCAATGTAGAGCCTTTAGAATATGGAATCGTGCTCTCAGGAAAGTCTTGGTCAAGCAGTCAGGCCATTTTTCCGAAAGGGTTTAAGAGCAGGGTCAAGTATATAAGTGTTTTAGATCCGTCAACTTTGTGTTACTATGTTTCTGAAATTCTCGATGCTGGACGGGAAGGACCTCTTTTCATGTCTTGCTCCCGTGGAAGAAAAACCTAA 3624 40.87 MNLTKNIKKIKYPKLEIRVWEEEDLKKKKQTNEKKKTYLEKSEKKKKNGENYARAKGKVTIFGGFTLIIIIIFTKLERKSFQISINKTKSKRGLKSSPQPYLSPIQPTQTPDVVVLDTVSLTYDIVALISGDMGTELIRVCVEEDSDDFPSVPPGFESFISFPLGKVHNHEKQDSHVPISLPKTVSESQPAKMETEVEVADVAKVMRSLRRKPCINYRQYDYCSDDERDTKRLDQNFSLRPPLSKGVIRGCPQCNNCQKVVARWRPEESCRPDLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHMWESSKFATRVQRIDKLQNRDSIRKNFRICNQMRRKRRRGNRKGVDVTTLNGKSGDAGSNEAERFGFDPGPDFTLALFQKYADDFKSQYFSKTLNDTAKGCNASMLQENEHWKPSLENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKSCTQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFDEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQFAVQLYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNNVCGKDGVLARAFKTRVEMECAWRNLPCSSSQAMKMERNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERFFLFRYDISELNILLEALQGKLSAVYRWARQDLGLALSTSRELSSQSSTKSFGNPNWKEFLRQSSLLPTQTAIDSPSHQAKKLSEVTASVLEDQKVISTLHGPGREVEQQNHKSEVKRETYDLVETNSRHAGSQFSKEDTNALHLVEVKNKMDKMCPANVILLSDDEGDEHKKMVSNGLAESSVVKQLETSDRFTDVDSKTSLCNHNENAILHTPVTDATTKEEKEVNLSIERKVNNCQSSIIPLNNKQSQNINLSVRNASNAIQNNNASEARLGHSNKVFPASTDTDSQKPQTCGSGKPNEGTTHGNVGTSATSCLLDTNRATGNLSCNQANVDRFLRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSSSQAIFPKGFKSRVKYISVLDPSTLCYYVSEILDAGREGPLFMSCSRGRKT 1207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 55938769 55948009 + Hsped.08g19950.1 Hepe08g1995 577967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1995 1207 MobiDBLite consensus disorder prediction 1066 1093 - -
Hepe08g1995 1207 ProSiteProfiles FYR domain FYRN motif profile. 1133 1191 IPR003888 GO:0005634(InterPro)
Hepe08g1995 1207 ProSiteProfiles JmjC domain profile. 491 657 IPR003347 -
Hepe08g1995 1207 SMART JmjN_1 276 317 IPR003349 -
Hepe08g1995 1207 SMART cupin_9 491 657 IPR003347 -
Hepe08g1995 1207 SMART fyrn_3 1147 1191 IPR003888 GO:0005634(InterPro)
Hepe08g1995 1207 Gene3D - 1141 1206 - -
Hepe08g1995 1207 Pfam C5HC2 zinc finger 747 798 IPR004198 -
Hepe08g1995 1207 MobiDBLite consensus disorder prediction 27 47 - -
Hepe08g1995 1207 PANTHER LYSINE-SPECIFIC DEMETHYLASE 270 1007 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Hepe08g1995 1207 Pfam JmjC domain, hydroxylase 524 640 IPR003347 -
Hepe08g1995 1207 MobiDBLite consensus disorder prediction 363 385 - -
Hepe08g1995 1207 SUPERFAMILY Clavaminate synthase-like 461 684 - -
Hepe08g1995 1207 Pfam jmjN domain 278 311 IPR003349 -
Hepe08g1995 1207 Gene3D Cupin 262 641 - -
Hepe08g1995 1207 ProSiteProfiles JmjN domain profile. 277 318 IPR003349 -
Hepe08g1995 1207 Pfam F/Y-rich N-terminus 1148 1190 IPR003888 GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2099 Hepe-Chr3:78959794 Hepe08g1995 Hepe-Chr8:55938769 2.97e-208 dispersed
Hepe06g1549 Hepe-Chr6:66204119 Hepe08g1995 Hepe-Chr8:55938769 9.26e-98 dispersed
Hepe07g1653 Hepe-Chr7:57868535 Hepe08g1995 Hepe-Chr8:55938769 1.96e-241 dispersed
Hepe08g1106 Hepe-Chr8:10956706 Hepe08g1995 Hepe-Chr8:55938769 7.62e-54 dispersed
Hepe08g1995 Hepe-Chr8:55938769 Hepe06g0994 Hepe-Chr6:57719690 5.12e-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56253 PF02373 JmjC 1.30E-44 CL0029 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1995 K11446 - csv:101208186 1853.95