Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g1995 ATGAATCTAACCAAAAACATAAAAAAAATAAAATACCCTAAACTTGAAATCAGAGTCTGGGAAGAAGAAGATTTAAAAAAAAAAAAACAAACAAATGAGAAGAAGAAGACATACCTGGAAAAGTCGGAGAAGAAGAAGAAGAATGGAGAAAATTATGCCCGGGCTAAAGGAAAAGTCACGATTTTCGGAGGCTTCACACTTATTATTATTATTATTTTTACCAAATTAGAAAGGAAAAGTTTCCAAATTTCAATAAATAAAACAAAATCCAAACGCGGCCTTAAATCATCTCCCCAACCCTATTTATCTCCAATCCAACCAACCCAAACCCCAGATGTGGTGGTACTGGATACAGTTTCTCTTACATATGACATAGTTGCTCTAATTTCAGGTGATATGGGGACAGAGCTTATAAGAGTTTGTGTTGAAGAAGATAGTGATGACTTTCCATCAGTTCCACCAGGTTTCGAGTCATTTATATCCTTTCCTCTAGGGAAGGTGCACAATCATGAAAAACAAGACAGTCATGTCCCTATTAGTTTGCCGAAAACCGTCTCTGAATCACAACCAGCTAAAATGGAAACTGAGGTAGAAGTTGCCGATGTTGCAAAAGTAATGAGGTCCCTCCGGCGTAAACCATGTATAAACTATAGACAATATGATTACTGCTCCGACGACGAGCGTGATACTAAGCGTCTTGATCAGAATTTTTCTTTAAGGCCTCCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGGACCTTGAGGATGCTCCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCACCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATGTGGGAGAGTTCTAAATTTGCAACTCGTGTCCAAAGGATTGATAAGCTTCAAAATCGAGATTCAATAAGAAAGAACTTTAGGATTTGCAATCAAATGAGAAGGAAAAGGAGAAGGGGTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGAAAAAGTGGAGATGCTGGGTCTAATGAAGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTACTTTAGCATTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAGTATTTTAGTAAAACACTCAATGATACTGCAAAGGGATGTAACGCGTCCATGCTGCAAGAGAACGAACATTGGAAACCATCTTTGGAAAATATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTGCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCCAAAGAGTTGCACCCAAGAGGGCTCTACATCAGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGACCTCTTTGATGAACAACCCGATTTACTTCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAATCCGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGCGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCGGTTGACTGGTTGCCCCATGGTCAATTTGCTGTACAATTATATCGTGAGCAGGGACGAAGAACTACTATTTCCCATGATAAACTTTTGCTTGGTGCCGCGAGAGAAGCTGTGAGAGCGCACTGGGAACTTAATTTACTGAAAAAAAATACTTTGGATAACTTAAGATGGAATAATGTTTGTGGAAAAGATGGAGTCTTAGCAAGAGCATTCAAGACACGTGTTGAGATGGAGTGTGCATGGAGGAACCTTCCTTGCAGTTCTTCTCAGGCAATGAAGATGGAGAGAAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCAAAGCAGTTGTGTTCTTGTGCTTGGGAAGAGAGATTTTTTCTCTTTCGCTATGACATCAGTGAATTGAACATACTTCTTGAAGCATTGCAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTAGCGCTCAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCTTTGGGAATCCTAATTGGAAAGAATTCTTGAGGCAATCTTCATTACTGCCAACTCAAACTGCTATTGACAGCCCTTCTCATCAAGCCAAAAAGTTATCTGAAGTTACTGCTTCTGTTCTAGAGGATCAGAAGGTAATTTCTACACTTCACGGACCTGGGAGGGAAGTTGAGCAGCAAAATCATAAATCTGAGGTGAAAAGAGAAACCTATGACCTTGTGGAAACCAATTCGAGGCATGCAGGTTCACAATTTTCTAAGGAGGATACAAATGCTCTGCATTTGGTAGAAGTGAAAAATAAAATGGATAAAATGTGTCCTGCAAATGTCATACTACTAAGTGATGATGAAGGTGATGAGCATAAGAAGATGGTTTCAAATGGTTTAGCTGAAAGTTCAGTAGTAAAGCAGCTGGAAACTTCAGATCGGTTCACTGATGTTGATTCTAAGACTAGCCTGTGCAACCACAATGAAAATGCAATCTTGCACACCCCGGTGACTGATGCAACGACCAAGGAAGAAAAGGAGGTCAACTTGTCGATCGAAAGAAAAGTGAATAATTGCCAATCGAGTATCATACCTTTAAACAATAAACAGTCTCAAAACATTAACTTATCAGTTAGAAATGCATCGAATGCTATTCAGAACAACAATGCTTCAGAAGCAAGATTAGGTCATAGTAATAAAGTATTTCCAGCTTCAACAGATACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAACCGAATGAGGGTACGACGCATGGAAATGTGGGAACAAGTGCTACCTCTTGTTTGTTAGACACTAATAGAGCTACTGGAAATTTATCCTGCAATCAAGCTAATGTGGACAGATTCTTGAGGCAGAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATTAATTGCAATGTAGAGCCTTTAGAATATGGAATCGTGCTCTCAGGAAAGTCTTGGTCAAGCAGTCAGGCCATTTTTCCGAAAGGGTTTAAGAGCAGGGTCAAGTATATAAGTGTTTTAGATCCGTCAACTTTGTGTTACTATGTTTCTGAAATTCTCGATGCTGGACGGGAAGGACCTCTTTTCATGTCTTGCTCCCGTGGAAGAAAAACCTAA 3624 40.87 MNLTKNIKKIKYPKLEIRVWEEEDLKKKKQTNEKKKTYLEKSEKKKKNGENYARAKGKVTIFGGFTLIIIIIFTKLERKSFQISINKTKSKRGLKSSPQPYLSPIQPTQTPDVVVLDTVSLTYDIVALISGDMGTELIRVCVEEDSDDFPSVPPGFESFISFPLGKVHNHEKQDSHVPISLPKTVSESQPAKMETEVEVADVAKVMRSLRRKPCINYRQYDYCSDDERDTKRLDQNFSLRPPLSKGVIRGCPQCNNCQKVVARWRPEESCRPDLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHMWESSKFATRVQRIDKLQNRDSIRKNFRICNQMRRKRRRGNRKGVDVTTLNGKSGDAGSNEAERFGFDPGPDFTLALFQKYADDFKSQYFSKTLNDTAKGCNASMLQENEHWKPSLENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKSCTQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFDEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQFAVQLYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNNVCGKDGVLARAFKTRVEMECAWRNLPCSSSQAMKMERNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERFFLFRYDISELNILLEALQGKLSAVYRWARQDLGLALSTSRELSSQSSTKSFGNPNWKEFLRQSSLLPTQTAIDSPSHQAKKLSEVTASVLEDQKVISTLHGPGREVEQQNHKSEVKRETYDLVETNSRHAGSQFSKEDTNALHLVEVKNKMDKMCPANVILLSDDEGDEHKKMVSNGLAESSVVKQLETSDRFTDVDSKTSLCNHNENAILHTPVTDATTKEEKEVNLSIERKVNNCQSSIIPLNNKQSQNINLSVRNASNAIQNNNASEARLGHSNKVFPASTDTDSQKPQTCGSGKPNEGTTHGNVGTSATSCLLDTNRATGNLSCNQANVDRFLRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSSSQAIFPKGFKSRVKYISVLDPSTLCYYVSEILDAGREGPLFMSCSRGRKT 1207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 55938769 55948009 + Hsped.08g19950.1 Hepe08g1995 577967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g1995 1207 MobiDBLite consensus disorder prediction 1066 1093 - -
Hepe08g1995 1207 ProSiteProfiles FYR domain FYRN motif profile. 1133 1191 IPR003888 GO:0005634(InterPro)
Hepe08g1995 1207 ProSiteProfiles JmjC domain profile. 491 657 IPR003347 -
Hepe08g1995 1207 SMART JmjN_1 276 317 IPR003349 -
Hepe08g1995 1207 SMART cupin_9 491 657 IPR003347 -
Hepe08g1995 1207 SMART fyrn_3 1147 1191 IPR003888 GO:0005634(InterPro)
Hepe08g1995 1207 Gene3D - 1141 1206 - -
Hepe08g1995 1207 Pfam C5HC2 zinc finger 747 798 IPR004198 -
Hepe08g1995 1207 MobiDBLite consensus disorder prediction 27 47 - -
Hepe08g1995 1207 PANTHER LYSINE-SPECIFIC DEMETHYLASE 270 1007 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Hepe08g1995 1207 Pfam JmjC domain, hydroxylase 524 640 IPR003347 -
Hepe08g1995 1207 MobiDBLite consensus disorder prediction 363 385 - -
Hepe08g1995 1207 SUPERFAMILY Clavaminate synthase-like 461 684 - -
Hepe08g1995 1207 Pfam jmjN domain 278 311 IPR003349 -
Hepe08g1995 1207 Gene3D Cupin 262 641 - -
Hepe08g1995 1207 ProSiteProfiles JmjN domain profile. 277 318 IPR003349 -
Hepe08g1995 1207 Pfam F/Y-rich N-terminus 1148 1190 IPR003888 GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g1995 K11446 - - csv:101208186 1853.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2099 Hepe-Chr3:78959794 Hepe08g1995 Hepe-Chr8:55938769 2.97e-208 dispersed
Hepe06g1549 Hepe-Chr6:66204119 Hepe08g1995 Hepe-Chr8:55938769 9.26e-98 dispersed
Hepe07g1653 Hepe-Chr7:57868535 Hepe08g1995 Hepe-Chr8:55938769 1.96e-241 dispersed
Hepe08g1106 Hepe-Chr8:10956706 Hepe08g1995 Hepe-Chr8:55938769 7.62e-54 dispersed
Hepe08g1995 Hepe-Chr8:55938769 Hepe06g0994 Hepe-Chr6:57719690 5.12e-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1995 . 133 1199 JUMONJI Transcription Factor Family AT1G08620 54.3 0.0e+00 1085.1
Hepe08g1995 . 258 820 JUMONJI Transcription Factor Family AT1G30810 57.6 8.8e-187 651.0
Hepe08g1995 . 259 813 JUMONJI Transcription Factor Family AT2G34880 53.6 6.6e-171 598.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56253 PF02373 JmjC 1.30E-44 CL0029 Hepe TR